BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486539 Length=1138 Score E Sequences producing significant alignments: (Bits) Value AT3G60660.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1681 0.0 > AT3G60660.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829); Has 131 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:22421410-22423477 FORWARD LENGTH=1200 Length=1200 Score = 1681 bits (910), Expect = 0.0 Identities = 1082/1161 (93%), Gaps = 27/1161 (2%) Strand=Plus/Plus Query 1 TTGGGAGATTGAGAGAGATTCGTGAAGAATGGAGGGAAATCAAGCTGGATCTTCTCTAGA 60 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 44 TTGGGAGATTGAGAGAGGTTAGTGAAGAATGGAGGGAAATCAAGCTGGATCTTCTCTAGA 103 Query 61 CTCGTTGATTGCTTCGTTCAATAAACGAATCTGCGAATTGCAGGAACTCGTCATCGCCAG 120 |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 104 TTCGTTGATTGCTTCTTTCAATAAACGAATCGGCGAATTGCAGGAACTCGTCATCGCCAG 163 Query 121 AAACATGTATCCGGCGAGTACCATCCCGGATTTATCGGCGATTGACACGGCGTTGAGCTC 180 |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 164 AAACATGTATCCTGCAAGTACCATCCCGGATTTATCGGCGATTGACACAGCGTTGAGCTC 223 Query 181 AATGGAGCTTCAGGTACAATCCATCAAGGACCGGTTACGTGAAGAAACCGAAGCTATTCC 240 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 224 AATGGAGCTTCAGGTACAATCGATCAAGGACCGATTACGTGAAGAAACCGAAGCTATTCC 283 Query 241 AAAAGCCAAGAAACTTATTGAGTCATCACTGAAACAGCAAGGGAAATTGCAGAAGATGTC 300 |||||| ||||||||||| ||| ||||||||||||| |||||||| |||||||||||||| Sbjct 284 AAAAGCTAAGAAACTTATAGAGGCATCACTGAAACAACAAGGGAAGTTGCAGAAGATGTC 343 Query 301 TATTTATGCACCTTCCCATATTCCTGACAGGGCTACAATGTTGAATTCAGATTTGAATAG 360 ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| Sbjct 344 TATTTATGCACCTTCCCATTTTCCTGACAAGGCTACTATGTTGAATTCAGATTTAAATAG 403 Query 361 ATGTTTGCTCCAAGAAAATGCCAAGCAGTACGAGCAACATTCAATTCCCAGCTCTTTGAA 420 |||| |||||||||| |||||||||||||||||||||||||| | || |||||||||||| Sbjct 404 ATGTCTGCTCCAAGAGAATGCCAAGCAGTACGAGCAACATTCTACTCTCAGCTCTTTGAA 463 Query 421 ATTTGATGAGGAAGTAGCTGTTTTACCCAAGGAAAAGAAGGGTCGCGGGTCTCCTCCGCT 480 |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || Sbjct 464 ATTTGATGAGGAAGCAGCTGTTTTACCCAAGGAGAAGAAGGGTCGCGGGTCTCCTCCCCT 523 Query 481 TTGGTACATCACTGTTGAGGAACTCAATTCACTCTCATCATACATGAGAGGAAGGCTCAC 540 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 TTGGTACATAACTGTTGAGGAACTCAATTCACTCTCATCATACATGAGAGGAAGGCTCAC 583 Query 541 GCTTGAAAAAGTGAATGCTGCTATCAATGACATGGCCTCATATGCTGAAGCAAATGCTCA 600 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 584 CCTTGAGAAAGTGAATGCTGCTATCAATGACATGGCCTCATATGCTGAAGCAAATGCTCA 643 Query 601 TCTTATTGCAGCCTCAAAACAGAAGCCGGCGGAAAATCTCTGGGAGAAAGCACTGAAACT 660 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 644 TCTTATTGCAGCCTCAAAACAGAAGCTAGCGGAAAATCTCTGGGAGAAAGCACTTAAACT 703 Query 661 ACGAGATATCGTAACAGAGCAAGCAGTGAAGGGCAAACATTTCTTTCTTGAAACTGACAT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 704 ACGAGATATCGTAACAGAGCAAGCAGTGAAGGGCAAACATTTCTTTCTTGAAACTGACAT 763 Query 721 GAAGGGACCAAGTTTGAAACTAGACAACACAGGAAAAGCAATACTCACTGTTCTTCGTCA 780 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 764 GAAGGGACCAAGTTTGAAACTAGACAACACAGGAAAAGCAATACTTACTGTTCTTCGCCA 823 Query 781 CCTTGGTCGTATCAGTGAGACTCGCATTGGACAAAACCGCGTCATCATTCTTATGAAGCC 840 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 CCTTGGTCGTATTAGTGAGACTCGCATTGGACAAAACCGCGTCATCATTCTTATGAAGCC 883 Query 841 TCACTAGAAACCAAC----TTGCCGCAAGTAAGCTGTTCATTTTCTCAAAGAGTAAAGGG 896 ||||||||||||||| ||||| |||||||| ||||||||||| ||| | |||| ||| Sbjct 884 TCACTAGAAACCAACCAACTTGCCTCAAGTAAGTTGTTCATTTTCACAA-GCGTAA-GGG 941 Query 897 GTAATTCCGTCATTTTCCA-TCAATTTCTTGCTTC-----A--T--T-GTACCA------ 939 |||||||||||||||| || | | ||||||||||| | | | |||||| Sbjct 942 GTAATTCCGTCATTTTTCAAT-AGTTTCTTGCTTCTTCTGAGCTCCTTGTACCATAGAAT 1000 Query 940 CA--GAAGGTCTACTGGTCCTTTAAACACCATTAAGCCTTAATCTTAATTCTTAAGACCG 997 || |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| Sbjct 1001 CATAGAAGGTCTACTGGTCCCTTAAACATCATTAAGCCTTAATCTTAATCCTTAAGACCG 1060 Query 998 GTCCGCCTGACAGGCCCAGCTAGGCCCAGCATTTGAATTTATAATATGGACAAAAATGTT 1057 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1061 GCCCGCCTGACAGGCCCAGCTAGGCCCAGGATTTGAATTTATAATATGGACAAAAATGTT 1120 Query 1058 TAATGCAATTTCTCATATTTTCATAAAAGTAGAAAAACTCGATTTCCGTTATTTTCATAA 1117 ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1121 TAATGCAATTT-TCACATTTGCATAAAAGTAGAAAAACTCGATTTCCGTTATTTTCATAA 1179 Query 1118 TATTATAAAAGTAATTTTTCT 1138 ||||| ||||| ||||| ||| Sbjct 1180 TATTAAAAAAGCAATTTCTCT 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55823006040 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5