BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486620
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61440.1 | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine... 2113 0.0
> AT3G61440.1 | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine
synthase C1 | chr3:22735747-22737980 FORWARD LENGTH=1433
Length=1433
Score = 2113 bits (1144), Expect = 0.0
Identities = 1281/1348 (95%), Gaps = 6/1348 (0%)
Strand=Plus/Plus
Query 1 GATGCAATGTATTTGTCTCGTTTTCTCATCCATTTATATGATTGCTTTCTTCTCCACCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGCAATGTATTTGTCTCGTTTTCTCATCCATTTATATGATTGCTTTCTTCTCCACCTC 60
Query 61 ACCTATCACTCCTCCTCTAAACTTTGATTCACTCTCTTGACTCTTCAAACTTCGTTTACT 120
||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 61 ACCAATCACTCCTCCTCTAAACTTTTCTTCACTCTCTTGTCTCTTCAAACTTCGGTTACT 120
Query 121 CCGTTTTAGTC-ATCAACAATGGCCTCTGTTTCAAGGAGGTTACTGAGAAAAGAGACGTT 179
||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 121 CCGTTTTAGTCGA-CAACAATGGCCTCTGTTTCAAGGAGGTTACTGAGGAGAGAGACGAT 179
Query 180 CCCCTGCTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGGCGGATCTCCTTCTTTTGC 239
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CCCCTGTTTCAGCCACACCGTGAGGAAACTCTTCTCCACCGTTGGATCTCCTTCTTTTGC 239
Query 240 TCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCCACTAACGCCAAACGCGATGCATC 299
|||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||
Sbjct 240 TCAGAGACTCAGAGATCTCCCCAAAGACTTCCCCTCTACCAACGCCAAACGTGACGCCTC 299
Query 300 TCTGCTTATTGGGAAAACGCCTCTTGTGTTTCTCAACAAAGTCACTGAAGGTTGTGAAGC 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TCTGCTTATTGGGAAAACGCCTCTTGTGTTCCTCAACAAAGTCACTGAAGGTTGTGAAGC 359
Query 360 GTATATTGCAGCCAAGCAAGAACATTTCCAGCCTACATGTAGCATCAAAGACAGACCAGC 419
|||| |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 360 GTATGTTGCAGCCAAACAAGAACATTTCCAGCCAACTTGTAGCATTAAAGACAGACCAGC 419
Query 420 TATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACTACATT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 420 TATAGCCATGATTGCAGATGCAGAGAAGAAAAAACTAATCATCCCTGGAAAAACAACACT 479
Query 480 GATAGAACCCACTTCAGGAAACATGGGAATTAGTTTGGCTTTCATGGCGGCTCTGAAAGG 539
|||||| || |||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 480 GATAGAGCCTACTTCAGGAAACATGGGAATCAGTTTGGCTTTCATGGCTGCTATGAAAGG 539
Query 540 GTACAAGATTATTATGACAATGCCTTCATACACTAGCTTGGAGAGGAGAGTGACGATGAG 599
||||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GTACAGGATTATAATGACGATGCCTTCGTACACTAGCTTGGAGAGGAGAGTGACGATGAG 599
Query 600 ATCCTTTGGTGCAGAGCTTGTTCTCACCGATCCAGCCAAAGGAATGGGTGGAACCGTTAA 659
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 600 ATCCTTTGGTGCTGAGCTTGTTCTCACTGATCCAGCCAAAGGAATGGGTGGAACTGTTAA 659
Query 660 GAAAGCTTATGACCTCCTTGAAAATACTCCTGATGCTTTTATGTGTCAACAGTTTGCTAA 719
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 660 GAAAGCTTATGACCTCCTTGATAGTACTCCTGATGCTTTCATGTGTCAACAGTTTGCTAA 719
Query 720 TCCAGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACT 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCTGCAAACACTCAGATTCATTTTGATACAACTGGTCCTGAGATTTGGGAAGATACACT 779
Query 780 TGGGAATGTTGATATATTCGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGG 839
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGAAATGTTGATATATTTGTGATGGGAATTGGCAGTGGAGGCACAGTCTCTGGTGTTGG 839
Query 840 CCAATACCTTAAATCTAAAAACCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAAAG 899
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CCGATACCTTAAATCTAAAAACCCCAATGTCAAGATATATGGAGTGGAGCCTGCTGAAAG 899
Query 900 CAACATACTCAACGGTGGCAAACCAGGTCCGCATGCTATCACAGGCAATGGGGTTGGATT 959
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 900 CAACATACTCAACGGTGGCAAACCAGGTCCACATGCTATCACAGGCAATGGTGTTGGATT 959
Query 960 CAAACCAGAAATCTTGGACATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGA 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CAAACCAGAAATCTTGGATATGGATGTTATGGAGAGTGTTCTTGAGGTTAGTAGTGAGGA 1019
Query 1020 TGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTTATGGTTGGGATATCGTC 1079
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 TGCTATAAAGATGGCTAGAGAATTGGCATTGAAAGAAGGTCTCATGGTTGGGATATCGTC 1079
Query 1080 GGGAGCTAACACCGTGGCAGCCATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACT 1139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGGAGCTAACACCGTGGCAGCAATTAGACTGGCGAAAATGCCAGAGAATAAAGGCAAACT 1139
Query 1140 CATTGTGACGATTCATGCGAGCTTCGGAGAGAGATATTTGTCGTCTGTTCTGTTTGATGA 1199
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1140 CATTGTGACAATTCATGCGAGCTTCGGAGAAAGATATCTGTCGTCTGTTCTGTTTGATGA 1199
Query 1200 GCTGAGGAAAGAAGCAGAAGAGATGAAGCCGGTTTCAGTTGATTGATGAAGAAAGACTTG 1259
|||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |
Sbjct 1200 GCTGAGGAAAGAAGCAGAGGAGATGAAGCCAGTTTCAGTGGATTGATGAAGGAAGACT-G 1258
Query 1260 ACTCTTTACCaaaaaaaTCTCGGGAGCAAAAGATTATAAAAACAA-GATGTAAGAGTAAT 1318
|| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1259 ACACTTTACCAAAAA--TCTCGGGAGCAAAAGATTATAAAAAGAAAGATGTAAGAGTAAT 1316
Query 1319 ATGTTTGTATTTATATTGTTGTATTGTT 1346
| |||||| ||||||||||| |||||||
Sbjct 1317 AAGTTTGTGTTTATATTGTTCTATTGTT 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5