BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486623 Length=693 Score E Sequences producing significant alignments: (Bits) Value AT3G61460.1 | Symbols: BRH1 | brassinosteroid-responsive RING-H... 1057 0.0 > AT3G61460.1 | Symbols: BRH1 | brassinosteroid-responsive RING-H2 | chr3:22741511-22742284 REVERSE LENGTH=774 Length=774 Score = 1057 bits (572), Expect = 0.0 Identities = 670/713 (94%), Gaps = 23/713 (3%) Strand=Plus/Plus Query 1 CTCTCTAAAAACCCTAACTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 CTCTCTAAAAACCCTAGCTTTCTCCATGGGCTTTCCCGTAGGTTACACAGAGGTTTTCTT 106 Query 61 ACCGAAGCTTTTCGTACAAACACTTTCGATTCTTGGTTTCATCAGAACCATCGTCTTCTC 120 ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 107 ACCGAAGCTTTTCGTACAAACGCTTTCGATTCTCGGATTCATCAGAACCATCGTCTTCTC 166 Query 121 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGACTA 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 167 TATCTTCCGCTTCTTGGGTCTCTCAGATTTTCTCGAAATGGATCAAACCTGGCCCGATTA 226 Query 181 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCCTTCTCCGCACTCCTAATCAG 240 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 227 CACATCGTACCCGACCCGAATACCCGAAACCCGCTCACCTTTCTCCGCACTCCTAATTAG 286 Query 241 AGAGATCTTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 300 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 287 AGAGATCCTACCGGTTATCAAATTCGAAGAGTTAACGAATTCCGGCGAAGATCTACCGGA 346 Query 301 AAACTGCGCCGTTTGTTTATACGAATTCGAAGGAGAGCAAGAGATCCGGTGGCTGAGAAA 360 |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 347 AAACTGCGCCGTTTGTCTATACGAATTCGAAGGAGAACAAGAGATCCGGTGGCTGAGAAA 406 Query 361 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 407 TTGCAGACATATATTTCACCGGAGCTGTCTTGACCGTTGGATGGATCATGATCAGAAGAC 466 Query 421 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 GTGTCCACTTTGTAGAACACCGTTTGTTCCAGATGAGATGCAAGAAGAGTTTAATCAACG 526 Query 481 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 GCTATGGGCTGCTTCTGGTGTTCATGATTTTCACTGTCCCGTGACCGAATTATTATAGAA 586 Query 541 GAA-------tttt-t-t--------gtgtcccttgtgttcttttttttgttttgacttt 583 ||| |||| | | ||||||||| ||||||||||| ||||||||||| Sbjct 587 GAAGCCACGCTTTTCTATCTTTTTCTGTGTCCCTTATGTTCTTTTTT--GTTTTGACTTT 644 Query 584 tcacccctgtacttttgattttactttttCCACCCC-CTTACTGACAATTAGATTTGCCA 642 ||||||| |||||||||| || |||||| |||||| |||||||||| ||||| |||||| Sbjct 645 -CACCCCTCTACTTTTGATGTTGCTTTTTTCACCCCTCTTACTGACATTTAGACTTGCCA 703 Query 643 CGCTTTTATGTGTGTATATTTTG-T-ACATATGAATGAGAGATGAGCAATAAA 693 ||||||||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 704 CGCTTTTATGTGTGTATATACTCCTTACATATGAATGAGAGATGAGCAATAAA 756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33556410196 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5