BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486624 Length=1019 Score E Sequences producing significant alignments: (Bits) Value AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting c... 1629 0.0 AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protei... 562 2e-159 > AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745653-22747282 FORWARD LENGTH=1107 Length=1107 Score = 1629 bits (882), Expect = 0.0 Identities = 983/1029 (96%), Gaps = 18/1029 (2%) Strand=Plus/Plus Query 1 CTTTTATAGATTACAC-A-TCA--TTC-CTTCGTTCTTCTTCTAACACACTTTGAGTCTT 55 |||||||||||||||| | || ||| ||| |||||||||||||||||| |||||||| Sbjct 1 CTTTTATAGATTACACAACACACGTTCGTTTCTTTCTTCTTCTAACACACTCTGAGTCTT 60 Query 56 GAAGGTCAACAACGTCGAGAAAAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 115 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 GAAGGTCAACAACGTCGAGAATAATGGCATCATCTCTTTGTGCTTCTTCTGCCATCGCTG 120 Query 116 CCATTTCTTCTCCAAGTTTCTTGGGTGGGAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 175 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 CCATTTCTTCTCCAAGTTTCTTGGGTGGTAAGAAACTGAGGCTGAAGAAGAAGTTGACTG 180 Query 176 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTCCAGCTGTGTCCAGGCCAGATGCGTCGGTGCGCGCCGTCGCAGCTGATCCAGATAGAC 240 Query 236 CGATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTCGACGGTAGCCTCCCCGGTGACT 295 | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 241 CAATCTGGTTCCCGGGAAGCACTCCTCCAGAGTGGCTAGACGGTAGCCTCCCTGGTGACT 300 Query 296 TCGGATTTGATCCCCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 355 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCGGATTTGATCCTCTTGGTCTTTCATCGGACCCGGACAGTCTAAAATGGAACGTACAAG 360 Query 356 CAGAGCTAGTCCACTGCCGGTGGGCGATGCTAGGAGCCGCCGGGATATTCATCCCGGAGT 415 | ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 361 CCGAGATAGTCCACTGCCGATGGGCTATGCTAGGAGCCGCCGGGATATTCATCCCAGAGT 420 Query 416 TCCTAACGAAGATTGGAATCCTCAACACTCCATCGTGGTACACGGCGGGAGAGCAAGAGT 475 ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 421 TCCTAACGAAGATCGGAATCCTCAACACTCCGTCATGGTACACGGCGGGAGAGCAAGAGT 480 Query 476 ATTTCACGGACAAAACCACACTCTTCGTCGTTGAGCTCATCTTGATCGGATGGGCCGAAG 535 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 481 ATTTCACGGACAAAACCACACTCTTTGTCGTTGAGCTCATTTTGATCGGATGGGCAGAAG 540 Query 536 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GACGTAGATGGGCCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAA 600 Query 596 ACAACAAACTGACGGGCACAGACGTTGGTTACCCGGGTGGGTTATGGTTCGACCCGTTGG 655 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 601 ACAACAAACTGACGGGCACAGACGTTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGG 660 Query 656 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTTGGGGATCCGGTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACG 720 Query 716 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GAAGGTTGGCTATGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTG 780 Query 776 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GTCCTATTGATAACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTG 840 Query 836 CTTTCACACCCAAGTGAGACGA-GAAAAAAGGGTTATGGGGAGGAGGAGAATGCGTTTGT 894 |||||||||||||||||||| | |||||| |||||||||||||| | | | ||||||||| Sbjct 841 CTTTCACACCCAAGTGAGACAACGAAAAA-GGGTTATGGGGAGGTG-A-A-TGCGTTTGT 896 Query 895 GTG--ATCATGTTTGTACAAATATCGTTTTGAACTTAAAAATATTTATGTA-TTTATATA 951 ||| |||||||||||||||||||| |||||||||||||| |||| ||||| |||||||| Sbjct 897 GTGTGATCATGTTTGTACAAATATCATTTTGAACTTAAAATTATT-ATGTACTTTATATA 955 Query 952 AATTGTGGTCGAATGCAAATTA-GGATTCACCTTAACACTCTCTTTTCCTAACTCAATGA 1010 |||||||||||||||||||||| || ||| || ||||||||| ||| ||||||||||||| Sbjct 956 AATTGTGGTCGAATGCAAATTAAGG-TTCCCCGTAACACTCT-TTT-CCTAACTCAATGA 1012 Query 1011 TCATAAGAT 1019 ||||||||| Sbjct 1013 TCATAAGAT 1021 > AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein | chr5:10372938-10374190 REVERSE LENGTH=562 Length=562 Score = 562 bits (304), Expect = 2e-159 Identities = 335/349 (96%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 548 CCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAAACAACAAACTGA 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 CCGATATCATCAAGCCCGGTAGCGTCAACACTGACCCAGTCTTCCCAAACAACAAACTGA 277 Query 608 CGGGCACAGACGTTGGTTACCCGGGTGGGTTATGGTTCGACCCGTTGGGTTGGGGATCCG 667 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 278 CGGGCACAGACATTGGTTACCCAGGTGGGTTATGGTTCGACCCGTTGGGTTGGGGATCCG 337 Query 668 GTAGCCCGGCTAAGCTCAAGGAGTTGAGGACCAAGGAGATCAAGAACGGAAGGTTGGCTA 727 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 338 GTAGCCCAACTAAGATCAAGGAGTTGAGGACCAAGGAGATCAAGAACGGAAGGTTGGCGA 397 Query 728 TGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTGGTCCTATTGATA 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 398 TGTTGGCAGTGATGGGTGCTTGGTTCCAACACATCTACACTGGCACTGGTCCTATTGATA 457 Query 788 ACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACAATCTTCGCTGCTTTCACACCCA 847 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 458 ACCTTTTTGCACATCTTGCTGATCCTGGTCACGCCACCATCTTCGCTGCTTTCACACCCA 517 Query 848 AGTGAGACGA-GAAAAAAGGGTTATGGGGAGGAGGAGAATGCGTTTGTG 895 |||||||| | |||||| |||||||||||||| | | | |||||||||| Sbjct 518 AGTGAGACAACGAAAAA-GGGTTATGGGGAGGTG-A-A-TGCGTTTGTG 562 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49932742118 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5