BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486646
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61590.1 | Symbols: HWS, HS | Galactose oxidase/kelch repeat... 2423 0.0
> AT3G61590.1 | Symbols: HWS, HS | Galactose oxidase/kelch repeat
superfamily protein | chr3:22791962-22794330 FORWARD LENGTH=1836
Length=1836
Score = 2423 bits (1312), Expect = 0.0
Identities = 1613/1748 (92%), Gaps = 61/1748 (3%)
Strand=Plus/Plus
Query 1 GTCTCTCTGTCTGTCTGTATCATTCATTC--G--TATTTACAATCGAGCCACGAAACGtc 56
|||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 54 GTCTCTCTATCTGTCTGTATCATTCATTCGTGTTTATTTACAATCGAACCACGAAACGTC 113
Query 57 tcttc-t-tctataaagaccagatttttctcaatctcaa--tctct--ctctcgctctcg 110
||||| | |||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 114 TCTTCTTCTCTATAAAAACCAGATTTTTCTCAATCTCAATCTCTCTCGCTCTCGCTCTCG 173
Query 111 ttttctttGATGAACCCTTTTACCTCATTTTTACTC-T--TAAATCCAAAAAT-CCGAGA 166
||||||||||||||||||||||| ||||| |||||| | ||||||| ||| | ||||||
Sbjct 174 TTTTCTTTGATGAACCCTTTTACTTCATTCTTACTCTTGATAAATCC-AAATTCCCGAGA 232
Query 167 AACCCATTTCATTTCCATCTTCTATTTCTAGGAAA-ATCTCATCTTTTCGGTCTTCTCAA 225
|||||||||||||||| |||||| |||||| |||| | | | || ||| | || || |
Sbjct 233 AACCCATTTCATTTCCTTCTTCTGTTTCTA-GAAAGA-C-C-TC--TTC--T-TT-TCGA 282
Query 226 TAAACCGAGATCCACGAAACCCGCATTTCCTCTCGCAAATCGATTAAAAATTTCGATAC- 284
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 283 TAAACCGAGATCCACGAAACCCGCATTTCCTCTCGCTAATCTATTCTAAATTTCGATACT 342
Query 285 ---------TTTTTATCGGTTTGAATCTCGAGAATTCGGAAGATTCAGAGACCCACGAGT 335
|||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 343 TTTTTTTTTTTTTTATCGGTTTGAATCTCGAGAATTCCGAAGATT--------CA-GAGT 393
Query 336 ATCCATAGTCGAAGTGGCTCTTGAGAATGGAAGCAGAAACGTCTTGGACTAATTATCCGT 395
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 394 CTCCATAGTCGAAGAGGCTCTTGAGAATGGAAGCAGAAACGTCTTGGACCAATTATCCGT 453
Query 396 ACAGCTACATTACTTATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGATGATGAAG 455
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 454 ACAGCTACATTACATATGTCCCTGAAGCTGAATCATACCGTGAGCAGAGCGACGATGAAG 513
Query 456 CCAAAGTTGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCC 515
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 CCAAAGTCGAAACCTTTTCAATGGATTCTCTTCTCCCTGACGATTTATTAGAACGAATCC 573
Query 516 TCTCGTTTCTACCCATTGCAAGCATTTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACG 575
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 574 TCTCGTTTCTACCCATTGCAAGCATCTTCAGAGCTGGTACTGTCTGCAAAAGATGGAACG 633
Query 576 AGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCTGTTTCTCAAAGGC 635
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 634 AGATTGTATCTTCTCGGAGGTTCTTATGTAATTTCTCCAACAATTCGGTTTCCCAAAGGC 693
Query 636 CTTGGTACTTCATGTTCACTAGCACGGATGATCCATCGGGTTATGCTTATGACCCGATTA 695
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 694 CTTGGTACTTCATGTTCACTACCACGGATGATCCATCTGGTTATGCTTATGACCCCATTA 753
Query 696 TCCGGAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCGAATTGGTTTGTTGCTT 755
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 754 TCCGCAAATGGTACAGTTTCGATCTCCCTTGTATCGAAACATCCAATTGGTTTGTTGCTT 813
Query 756 CCTCTTGTGGATTGGTTTGTTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAA 815
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CCTCTTGTGGATTGGTTTGCTTCATGGACAATGATTGCAGAAACAAGATTTATGTCTCAA 873
Query 816 ATCCAATTACCAAACAATGGAGGAGGCTTATTGAACCTCCCGGTCACAGATCGACAGATT 875
|||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 874 ATCCAATTACCAAACAATGGAGGACGCTTATTGAACCTCCTGGTCACAAATCGACAGATT 933
Query 876 ACACGGCAATGTCTACCTCCGTGAACCGAGCTAACCAATCAAACAGAGCAGT-AACACGT 934
|||||||||||||||||||||| ||||||| | || | || |||||| ||| ||
Sbjct 934 ACACGGCAATGTCTACCTCCGTAAACCGAG----CGAA-C---CA-AGCAGTAAAC-CGC 983
Query 935 GGAAACCGGACTTACTCAGTCTCTATAGTGAAATCGAAGCAAGTTACTGGGAATTTCTTC 994
| |||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 984 GCAAACCGGAGTTACTCAGTCTCGATAGTGAAATCGAAGCAAGTTCCAGGGAATTTCTTC 1043
Query 995 CAATGGGATATCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATCAGTA 1054
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1044 CAATGGGATCTCTCTATTCATCTCTACAGCTCTGAAACAATGACTTGGACAACATTAGTA 1103
Query 1055 ACCGATGTCTTATCCGGATGGAGAGGAGGAAACGAGAGTGTGATCTGCAACGATGTTCTT 1114
| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1104 AACGATGTCTTATCCGGATGGAGAGGAGGGAACGAGAGTGTGATCTGCAACAATGTTCTT 1163
Query 1115 TACTTCATGATTTACCCCACGGGAGGCTCAGATCATCGACACGGCTTGATTGCTTCCAAT 1174
||||||||||| ||| | |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1164 TACTTCATGATATACTCAACGGGAGGCTCAGATCATCGCCACGGCTTGATCGCTTCGAAT 1223
Query 1175 CTATCCTCGATTGGATCATCGTCAAGCGGCATCTTGATGAGGAGTTTCATTCCAATGCCG 1234
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1224 CTATCCTCGATAGGATCACCGTCAAGCGGAATCTTGATGAGGAGTTTCATTCCAATGCCG 1283
Query 1235 TGTTCTTTAACCTGCGGAAGATTGATGAATCTAAGAGAGAGGCTTGTGATCGTTGGAGGA 1294
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 1284 TGTTCTTTAACCTGCGGGAGATTGATGAATCTAAGAGAGAGGCTTGTGATTGTCGGAGGA 1343
Query 1295 ATCGGGAAACACGATCGACCAGAGGTTATAAAAGGAATTGGGATTTGGGTTCTGAAAGGG 1354
||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1344 ATCGGGAAACATGATCGACCAGAGGTTATAAAAGGGATAGGGATTTGGGTTTTGAAAGGG 1403
Query 1355 AAAGAATGGGTAGAAATGGCTAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTC 1414
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1404 AAGGAATGGGTAGAGATGGCGAAAATGCCTCAAAGATTCTTCCAAGGTTTTGGTGAATTC 1463
Query 1415 GACGAGGTTTTCGCGAGTAGTGGCACTGATGATTTGGTTTACATTCAAAGCTATGGATCT 1474
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1464 GACGAGGTTTTCGCGAGTAGTGGCACGGATGATTTGGTTTACATTCAAAGCTATGGATCT 1523
Query 1475 CCCGCGCTTCTCACTTTCGACATGAATCTCAAGTACTGGAGATGGTCTCAAAAATGTCCT 1534
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1524 CCCGCGCTTCTCACGTTCGACATGAATCTCAAGTATTGGAGATGGTCTCAGAAATGTCCT 1583
Query 1535 GTTACTAAGAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAG 1594
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GTTACTAAAAAGTTCCCTCTTCAGCTCTTTACTGGGTTTTGCTTCGAACCAAGACTCGAG 1643
Query 1595 ATTGCTCCGTAGTTGCAATGAAGAAGCAAATGGGTCTGCAAAAGTCTTAGTCTTTTGGAT 1654
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1644 ATTGCTCCTTAGTTGCAATGAAGAAGCAAATGGGTCTGTGAAAGTCTTGGTCTTTTGGAT 1703
Query 1655 TGTTTTTGCACAGAGAAATCGCCGGCGG-TTTGATGAAGATGAT-A--CGGTAATGTTTT 1710
|||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||
Sbjct 1704 TGTTTTTGCACAGAGAAATCGCCGGCGGCTTT-ATGAAGATGATGATACGGTAATGTTTT 1762
Query 1711 TAATTTTT 1718
||| ||||
Sbjct 1763 TAAATTTT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5