BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486683 Length=1666 Score E Sequences producing significant alignments: (Bits) Value AT3G61820.1 | Symbols: | Eukaryotic aspartyl protease family p... 2435 0.0 > AT3G61820.1 | Symbols: | Eukaryotic aspartyl protease family protein | chr3:22879804-22881630 REVERSE LENGTH=1827 Length=1827 Score = 2435 bits (1318), Expect = 0.0 Identities = 1516/1609 (94%), Gaps = 23/1609 (1%) Strand=Plus/Plus Query 1 GAGCTTCATTTTGCCTTTATATACTTTTGGGTAGATACA-A-ATAGACTATAGTCTCTAT 58 |||||||||||||||||| |||||||||| ||||||| | | | |||||||||||| ||| Sbjct 1 GAGCTTCATTTTGCCTTTGTATACTTTTGAGTAGATAGATAGACAGACTATAGTCTATAT 60 Query 59 AAGATCCATGTGACAATAGTTAAAATCCTCTCATATTTTCATTTCCAATGGAGCG-AAAT 117 |||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| Sbjct 61 AAGATCCATGTGACAATAGTTAAAAT-C-CTCATATTTTCATTTCCAATGGAGCGCAAA- 117 Query 118 GTCCTAAATACCCTCGTCTTCTCCGTCTTTGTCGTTCTCTTCTTCACCTCCATTTCCTCC 177 ||| | |||||||||| |||||||||||||| |||||||||| | | || ||||| Sbjct 118 GTCTTGAATACCCTCGCCTTCTCCGTCTTTGCCGTTCTCTTC-T----T-CA---CCTCC 168 Query 178 TCTGCTTCCTCCCAATACCAAACTCTCGTCGTCAACACTCTTCCTTCCTCCGCAACCCTC 237 |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct 169 TCTGCTTCTTCCCAATACCAAACTCTTGTCGTCAACACTCTTCCTTCTTCCGCAACACTC 228 Query 238 TCGTGGCCCGAATCCGAATCTTTCTCTGATGAATCCGTATCCGAATCCACAACTTCACTC 297 || |||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct 229 TCATGGCCCGAGTCCGAATCTTTAACTGATGAATCTTTATCCGAGTCCACAACTTCACTC 288 Query 298 TCTGTTCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCCTCTCCGGTGGAC 357 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 289 TCTGTCCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCATCTCCGGCGGAC 348 Query 358 CTTTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCCATAACCAGCCTCGCC 417 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 349 CTCTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCTATTACCAGCCTCGCC 408 Query 418 GCCGTGTCAACCGGACGGAATGCCT-CCAAAAGAACTCCACGCT-CAGCAGGTGGATTTA 475 ||||| ||||||||||| |||| || | |||||||||||||| | | || |||||||||| Sbjct 409 GCCGTATCAACCGGACGAAATG-CTACGAAAAGAACTCCACG-TACCGCCGGTGGATTTA 466 Query 476 GCGGCGCCGTTATCTCCGGTCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTG 535 ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 467 GCGGCGCAGTTATCTCTGGCCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTG 526 Query 536 TTGGAACTCCGGCGACTAACGTTTACATGGTCCTCGACACAGGTAGCGACGTCGTTTGGC 595 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 527 TTGGAACTCCGGCGACTAACGTTTACATGGTGCTCGACACAGGAAGCGACGTCGTTTGGC 586 Query 596 TCCAATGCTCTCCTTGCAAAGCCTGTTACAACCA-ATCCGACGTCATTTTTGACCCCAAG 654 |||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||| Sbjct 587 TCCAATGCTCTCCTTGCAAAGCCTGTTACAACCAGA-CCGACGCCATTTTTGACCCGAAG 645 Query 655 AAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGAC 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 AAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGAC 705 Query 715 TCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGAT 774 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 TCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGAC 765 Query 775 GGATCATTCACGGAAGGAGATTTCTCAACCGAAACGCTGACGTTTCACGGAGCGCGTGTT 834 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 766 GGATCATTCACCGAAGGAGATTTCTCAACTGAAACGCTGACGTTTCATGGAGCGCGTGTT 825 Query 835 GATCACGTGCCGTTAGGATGTGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGG 894 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 826 GATCACGTGCCGTTAGGATGCGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGG 885 Query 895 CTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTTCCGTCGCAGACGAAAAACCGTTATAAC 954 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 886 CTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTCCCGTCGCAGACGAAAAACCGTTATAAC 945 Query 955 GGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCGCCG 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 946 GGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCACCG 1005 Query 1015 TCAACTATCGTCTTCGGAAACGACGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTA 1074 ||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1006 TCAACAATCGTGTTTGGAAACGCCGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTA 1065 Query 1075 ACGAATCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGT 1134 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1066 ACGAACCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGT 1125 Query 1135 TCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGT 1194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1126 TCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGT 1185 Query 1195 GTTATTATCGATTCCGGTACTTCGGTTACTCGGCTGACGCAATCTGCATACGTGGCGCTT 1254 || ||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||| Sbjct 1186 GTCATTATAGATTCCGGTACTTCGGTTACTCGGCTGACGCAACCTGCTTACGTAGCGCTT 1245 Query 1255 AGAGACGCGTTTCGACTTGGTGCGACGAAGCTGAAACGTGCTCCGTCGTATTCTTTGTTC 1314 |||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1246 AGAGACGCTTTTAGACTTGGTGCTACGAAGCTGAAACGTGCTCCATCGTATTCTTTGTTC 1305 Query 1315 GACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTGGTGTTCCAT 1374 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1306 GACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTTGTGTTTCAT 1365 Query 1375 TTCGGAGGTGGAGAGGTTTCACTTCCGGCGAGTAATTATCTGATTCCGGTGAACACTGAA 1434 |||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| Sbjct 1366 TTCGGAGGCGGAGAGGTTTCGCTTCCGGCGAGTAATTATCTGATCCCGGTTAACACTGAA 1425 Query 1435 GGACGGTTCTGTTTTGCGTTCGCCGGAACTATGGGGAGTTTGTCGATAATTGGAAACATA 1494 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 1426 GGACGGTTCTGTTTTGCGTTTGCCGGAACTATGGGGAGTTTGTCAATCATTGGAAACATA 1485 Query 1495 CAGCAACAAGGTTTCCGGGTCGCTTACGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCT 1554 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1486 CAGCAACAAGGTTTCCGGGTCGCTTATGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCT 1545 Query 1555 CGCGCGTGTTAGATTTTGAGTTTGAGTTGACTGATTTATTTCCACAAAG 1603 |||||||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 1546 CGCGCGTGTTAGATTTTGAGCTTGAGTTGACTGATTTATT-CC-CAAAG 1592 Score = 104 bits (56), Expect = 3e-21 Identities = 65/69 (94%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1598 ACAAAGCAAATTATCAAACATTGTTATCATCATCGACTTATCTTACTACTCATTAGTCAT 1657 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1612 ACAAAGCAAATTATCAAACATTGTTATCATCATCGACT-ATCATACTACTCATTAGTCAT 1670 Query 1658 GATTAATGA 1666 ||| |||| Sbjct 1671 CATTCATGA 1679 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82328893800 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5