BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486691
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1435 0.0
> AT3G61870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; Has 200 Blast hits to 200 proteins
in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0;
Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35
(source: NCBI BLink). | chr3:22902638-22904070 FORWARD LENGTH=1058
Length=1058
Score = 1435 bits (777), Expect = 0.0
Identities = 953/1031 (92%), Gaps = 40/1031 (4%)
Strand=Plus/Plus
Query 1 AGGATGTCTCTCTTG--T-TTCTTCACTC-TTTTGCCACAATCTCTGTTCCAAGACCCga 56
||||||||||| ||| | |||||||||| ||||||||||||||||||||| | |
Sbjct 1 AGGATGTCTCTATTGTTTCTTCTTCACTCTTTTTGCCACAATCTCTGTTCC---A----A 53
Query 57 gagagagagagTATGGCGACCACACTTCATTGTCTCTCCACACTCCATCTTCTTCCTCGC 116
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 GA-ATCGCGAGTATGGCGACCACACTTCATTGTCTCTCCACACTCCATCTTCTTCCTCGC 112
Query 117 ACCCATCACCCTAAAACCCTAAACTCTCTCAAACCAAT---CACCAAATCACAACCATGC 173
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 113 ACTCATCACCCTAAAACCCTAAACTCTCTCAAACCAATCACCACCAAATCACAACCATGT 172
Query 174 AAAATCCCAGATATACCCTCCACTCCCAACGCTCTCCAACTCCTTAAATCATCCTCTCTC 233
|||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 173 AAAACCCCAGAAATACCCTCCACTCCCAACGCTCTTCAGCTCCTTAAATCATCCTCTCTC 232
Query 234 CCTCTCGCAGTCATCGCATTGCCTTTCTTCCTCGACCCACAGGATGCAGCAGCAGCTGGA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CCTCTCGCAGTCATCGCATTGCCTTTCTTCCTCGACCCACAGGATGCAGCAGCAGCTGGA 292
Query 294 GGAGAATTTGGGATATTGGAAGGAAGATCATTTGCGTTAATACACCCAATTGTGATGGGA 353
|||||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 293 GGAGAATTCGGAATATTAGAAGGGAGATCATTTGCGTTGATACACCCAATTGTGATGGGA 352
Query 354 GGTTTATTCGCATACACTCTTTGGGCTGGTTACTTAGGTTGGCAATGGAGACGTGTCCGT 413
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 353 GGTTTATTTGCATACACTCTTTGGACTGGTTACTTAGGTTGGCAATGGAGACGTGTCCGT 412
Query 414 ACGATACAGAGTGAGATCAGTGAGCTCAAGAAACAGCTTAAACCAACTCCTGTTTCTCCT 473
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 413 ACGATACAGAGTGAGATTAGTGATCTCAAGAAACAGCTTAAACCAACTCCTGTTTCCCCT 472
Query 474 GATGGATCCACTGCCGTTGATTCTTCGTCGCCTCCTTCTACGACTGAGCTTCAGATCCAA 533
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GATGGTTCCACAGCCGTTGATTCTTCGTCGCCTCCTTCTACGACTGAGCTTCAGATCCAA 532
Query 534 CGGCTGACAGAAGAGAGGAAAGAGTTGGTCAAAGGGTCTTACAGAGACAAACACTTTGAC 593
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGGCTAACTGAAGAGAGGAAAGAGTTGGTCAAAGGGTCTTACAGAGACAAACACTTTGAC 592
Query 594 GCTGGCTCTGTTTTGTTAGGTTTTGGTGTTTTGGAAGCTGTCTTTGGTGGTGTTAACACT 653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGGCTCTGTTTTGTTAGGTTTCGGTGTTTTGGAAGCTGTCTTTGGTGGTGTTAACACT 652
Query 654 TATCTTCGTACCGGTAAACTATTCCCCGGTCCTCATCTTTACGCCGGTGCAGGAATAACG 713
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 653 TATCTTCGTACTGGTAAACTCTTCCCCGGTCCTCATCTTTACGCCGGTGCAGGAATAACG 712
Query 714 GTGTTGTGGGCGGCGGCGGCTGCATTAGTGCCGGCAATGCAGAAAGGGAACGAGACGGCG 773
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 713 GTGTTGTGGGCGGCGGCGGCAGCATTGGTGCCGGCAATGCAGAAAGGGAACGATACGGCG 772
Query 774 AGGAGTCTACACATTGCGTTGAATGCAGTAAATGTTCTTCTTTTCATTTGCCAAATCCCA 833
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 773 AGGAGTCTACATATAGCGTTGAATGCAGTAAATGTTCTTCTTTTCATTTGGCAAATCCCA 832
Query 834 ACAGGTCTTGATATCGTCCTTAAGGTCTTTGAGTTCACTAAATGGCCATAGATATTA-T- 891
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 833 ACAGGTCTTGATATCGTTCTTAAGGTCTTTGAGTTCACTAAATGGCCATAGATATTAATA 892
Query 892 ---G-A-GT-TT------GA--------CTCTATATATGCAAATATTCTGCAACtttttt 931
| | || || || ||||||||||||||||||||| ||||||||||
Sbjct 893 TTTGGATGTGTTATTTATGAGTTTGTGACTCTATATATGCAAATATTCTTCAACTTTTTT 952
Query 932 ttGAGGTTTGTAAATGATGAAATTGTAAGAAATCATGCAATTAGAGTTAATATTGGAATA 991
| |||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 953 T-GAGGTTTGTAGATGATGAA-TTGTAA-AAATCATGCAATTAGAGTGGATATTGGAATA 1009
Query 992 ATGGTGGAAAA 1002
|||||||||||
Sbjct 1010 ATGGTGGAAAA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5