BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486694
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61890.1 | Symbols: ATHB-12, ATHB12, HB-12 | homeobox 12 | c... 1570 0.0
AT2G46680.1 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:... 274 1e-72
> AT3G61890.1 | Symbols: ATHB-12, ATHB12, HB-12 | homeobox 12 |
chr3:22914154-22915325 REVERSE LENGTH=986
Length=986
Score = 1570 bits (850), Expect = 0.0
Identities = 936/978 (96%), Gaps = 4/978 (0%)
Strand=Plus/Plus
Query 1 AAAGAAGAAACAAATAATTCCAAAACCTTCTCTCTTAATCGAAATCAAGAAACTTGCAAG 60
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 13 AAAAAAGAAACAAATAATTCCAAAACCTTCTCTCTTAATCAAAATCAAGAAACTTACAAG 72
Query 61 ATCTGGTGAAAACCATGGAAGAAGGAGATTTTTTCAACTGCTGCTTCAGCGAGATTAATA 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 73 ATCTGGTGAAAACCATGGAAGAAGGAGATTTTTTCAACTGCTGTTTCAGCGAGATTAGTA 132
Query 121 GTGGCATGACCATGAATaagaagaagatgaagaagaagaGCAATAGCCAGAAGAGGTTTA 180
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 133 GTGGCATGACCATGAATAAGAAGAAGAT---GAAGAAGAGCAATAACCAAAAGAGGTTTA 189
Query 181 GCGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCCGAGACGAGGCTTGAACCGA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 190 GCGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCTGAGACGAGGCTTGAGCCGA 249
Query 241 GGAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GGAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGT 309
Query 301 TTCAGAACAAGAGGGCTCGTTGGAAAACTAAGCAACTTGAGAAAGAGTATAACATTCTTC 360
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 310 TTCAAAACAAGAGGGCTCGATGGAAAACTAAGCAACTTGAGAAAGAGTATAACACTCTTA 369
Query 361 GATCCAATTACAACAATTTGGCTTCACAATTTGAAATCATGAAGAAAGAAAAGCAATCTC 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GAGCCAATTACAACAATTTGGCTTCACAATTTGAAATCATGAAGAAAGAAAAGCAATCTC 429
Query 421 TTGTCTCTGAGTTGCAGAGACTAAATGAGGAGATGCAAAAGCCTAAAGAAGAAAAGCATC 480
| ||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||
Sbjct 430 TGGTCTCTGAGCTGCAGAGACTAAACGAAGAGATGCAAAGGCCTAAAGAAGAAAAGCATC 489
Query 481 ATGAGTGTTGTGGTGATCAAGGAGTGGCTCTAAGCAGCAGCACAGAGTTGCATAATGGAA 540
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 490 ATGAGTGTTGTGGTGATCAAGGACTGGCTCTAAGCAGCAGCACAGAGTCGCATAATGGAA 549
Query 541 AGAGTGAGCCAGAAGTGAGGTTAAACCAAGGGATTGTTCTATGTGATGATGGTGATTACA 600
||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 550 AGAGTGAGCCAGAAGGGAGGTTAGACCAAGGGAGTGTTCTATGTAATGATGGTGATTACA 609
Query 601 ACAACAACATTAAAACAGAGTATTTTGGGTTCGAGGAAGAGACTGATCATGAGCTCATGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 610 ACAACAACATTAAAACAGAGTATTTTGGGTTCGAGGAAGAGACTGATCATGAGCTGATGA 669
Query 661 ACATTGTGGAGAAAGCTGATGATAGTTGCTTGACATCTTCTGAGAATTGGGGAGGTTTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACATTGTGGAGAAAGCTGATGATAGTTGCTTGACATCTTCTGAGAATTGGGGAGGTTTCA 729
Query 721 ATTCTGATTCTCTGTTAGACCAATCTAGCAGCCATTACCCTAATTGGTGGGAGTTTTGGT 780
||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 730 ATTCTGATTCTCTCTTAGACCAATCTAGCAGCAATTACCCTAACTGGTGGGAGTTTTGGT 789
Query 781 CATAAAAACATATAAGAAAGAAACAAAACATAAGTGAAGAGAAAGAGTGTGAATAGTTTG 840
||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 790 CATAAAAGCATATAAGAAAAAAACAGAACATAAGCGAAGAGAAAGAGTGTGAATAGTTTG 849
Query 841 TAGATTATGTGTTAAGGAAAATAAATTTTAGTTTAGTTTAAATCTTGTTTCGATCTATGT 900
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 850 TAAATTATGTGTTAAGAAAAATAAATTT-AGTTTAGTTTAAATCTTGTTTCGATCTATGT 908
Query 901 ATCTACTATGTTCAATACTCTTTGTAGCTAATTAGTAGCTTATGATGAGACTAGAAAAGT 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 909 ATCTACTATGTTCAATACTCTTTGTAGCTAATTAGTAGCTTATAATGAGACTAGAAAAGT 968
Query 961 TTTGAAGTCATCATGGTT 978
|||||||||| || ||||
Sbjct 969 TTTGAAGTCACCAAGGTT 986
> AT2G46680.1 | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165403-19166949
REVERSE LENGTH=1327
Length=1327
Score = 274 bits (148), Expect = 1e-72
Identities = 328/412 (80%), Gaps = 23/412 (6%)
Strand=Plus/Plus
Query 127 TGACCATGAATaagaagaagatgaag-aagaagaGCAATAGC---CAGAAG-AGGTTTAG 181
|||||||||| |||| ||||| | || || | | ||| | | ||| || ||||||||
Sbjct 229 TGACCATGAAGAAGATGAAGAAG-AGCAACCACAACAAGAACAATCAG-AGAAGGTTTAG 286
Query 182 CGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCCGAGACGAGGCTTGAACCGAG 241
||| || |||||||||||||| ||| | || |||||||| ||||| |||||||| || ||
Sbjct 287 CGACGAGCAGATCAAGTCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAG 346
Query 242 GAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGTT 301
|||||||||||| ||||||||||||||||| |||| || || |||||||||||||||||
Sbjct 347 GAAGAAGGTTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTT 406
Query 302 TCAGAACAAGAGGGCTCGTTGGAAAACTAAGCAACTTGAGAAAGAGTATAACATTCTTC- 360
||||||||||||||||||||||||| | ||||| || |||| ||||| |||||||| |
Sbjct 407 TCAGAACAAGAGGGCTCGTTGGAAATCCAAGCAGCTCGAGACTGAGTACAACATTCT-CA 465
Query 361 GATCCAAT-TACAACAATTTGGCTTCACAATTTGAAATCATGAA-GAAAGAAAAGCAATC 418
|| | || ||| |||| |||||||| || || || || | || ||||||||| ||| |
Sbjct 466 GA-CAAAACTACGACAACTTGGCTTCTCAGTTCGAG-TCCTTAAAGAAAGAAAAACAAGC 523
Query 419 TCTT-GTCTCTGAGTTGCAGAGACTAAATGAGGAGATGCAAAAGCCTAAAGAAGAAAAGC 477
| || ||||||||||||||||| ||||| |||| || ||||||| | | | || ||
Sbjct 524 T-TTAGTCTCTGAGTTGCAGAGGCTAAAAGAGGCGACGCAAAAGAAGACACAGGAGGAGG 582
Query 478 ATCATG-AGTGTTGTGGTGATCAAG-GAGTGG---CTCTAAGCAGCAGCACA 524
| | | ||||| |||| ||||||| | |||| |||||||||||| ||||
Sbjct 583 AA-AGGCAGTGTAGTGGAGATCAAGCG-GTGGTTGCTCTAAGCAGCA-CACA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5