BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486711
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62030.2 | Symbols: ROC4 | rotamase CYP 4 | chr3:22973004-22... 1467 0.0
> AT3G62030.2 | Symbols: ROC4 | rotamase CYP 4 | chr3:22973004-22975378
FORWARD LENGTH=1181
Length=1181
Score = 1467 bits (794), Expect = 0.0
Identities = 868/904 (96%), Gaps = 3/904 (0%)
Strand=Plus/Plus
Query 1 ATTGGGTTCGTTGTTAAGTCGCAATTAGTTTCCGCAAATCGAACATCTCAATCAGTTTGC 60
|||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 214 ATTGGGTTCGGTGTTAAGTCGCAATTAGTTTCTGCAAATCGAACAACTCAATCAGTTTGC 273
Query 61 TTCGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TTTGGAGCTCGTTCCTCTGGAATTGCATTATCTTCGAGATTGCACTATGCATCACCCATT 333
Query 121 AAGCAATTTTCCGGAGTTCATGCGACCACCAAGCACCAGAGAACTGCTTGTGTTAAATCC 180
||||||||||| || ||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 334 AAGCAATTTTCTGGGGTTTATGCGACCACCAAGCATCAGAGAACCGCTTGTGTTAAATCC 393
Query 181 ATGGCGGCTGAGGAAGAGGAAGTAATAGAACCTCAAGCTAAAGTGACAAACAAGGTTTAC 240
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 394 ATGGCTGCTGAGGAAGAAGAAGTAATCGAACCTCAAGCTAAAGTGACAAACAAGGTTTAC 453
Query 241 TTTGATGTGGAAATTGGAGGTGAAGTTGCTGGAAGAATTGTGATGGGTCTCTTTGGAGAA 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 454 TTTGATGTGGAAATTGGAGGTGAAGTTGCTGGCAGAATTGTGATGGGTCTCTTTGGAGAA 513
Query 301 ATTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAAAAATACGGG 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 514 GTTGTGCCTAAAACCGTTGAAAACTTCCGTGCCTTGTGTACTGGTGAGAAGAAATACGGG 573
Query 361 TACAAGGGTTCCTCTTTCCATCGTATTATCAAGGATTTCATGATCCAAGGAGGTGATTTC 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 574 TACAAGGGTTCCTCTTTCCATCGTATTATTAAGGATTTCATGATCCAAGGAGGTGATTTC 633
Query 421 ACTGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTTGAAGATGAAAAC 480
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 ACCGAGGGAAATGGTACTGGAGGTATTAGTATTTACGGTGCCAAGTTCGAAGATGAAAAC 693
Query 481 TTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTCACCCTGAAGCATACTGGACCTGGAATCTTGAGCATGGCAAACGCTGGTCCTAATACT 753
Query 541 AATGGAAGCCAGTTTTTCATTTGCACTGTCAAGACTCCATGGTTAGATAACAAGCATGTT 600
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 754 AATGGAAGCCAGTTTTTCATTTGTACCGTCAAGACTTCATGGTTAGATAACAAGCATGTC 813
Query 601 GTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GTGTTTGGACAAGTAATTGAAGGTATGAAGCTTGTTAGGACTCTTGAGTCTCAAGAGACT 873
Query 661 CGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CGCGCTTTCGATGTTCCCAAGAAAGGTTGTAGAATCTATGCCTGCGGAGAGCTCCCGTTA 933
Query 721 GAAGCTTGATAATCACCATTGACCGGTGCATTGTCATTGCGATCTTTGTTCTGTTTTTTA 780
|| ||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 934 GATGCTTGATAATCACTATTGACCGATGCATTGTCTTTGCCATCTTTGTTCTGTTTTTTG 993
Query 781 CTATTATGACTATTGAGGAATCCAAACCATCAAAAAGCCAAAGATTTTCAAATTCTGGTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 CTATTATGACTATTGAGGAATCCAAACCATCAAAAAGCCAAAGATTTTCAAATTCTGGTC 1053
Query 841 TTTTGTTTATT-TAT-TT-CGGATACATGAGTTAAAAGTTCTTTTAATCGATGTGGAATT 897
|||| |||||| ||| || ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1054 TTTTATTTATTATATATTTCGGATACATGAGTTATAAGTTCTTTTAATCGATGTGGGATT 1113
Query 898 GTTA 901
|||
Sbjct 1114 CTTA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5