BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486746 Length=528 Score E Sequences producing significant alignments: (Bits) Value AT3G62410.1 | Symbols: CP12-2, CP12 | CP12 domain-containing pr... 682 0.0 > AT3G62410.1 | Symbols: CP12-2, CP12 | CP12 domain-containing protein 2 | chr3:23090944-23091566 FORWARD LENGTH=623 Length=623 Score = 682 bits (369), Expect = 0.0 Identities = 415/438 (95%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 24 CGTGTATCTTCTCCATCCAAAGATGGCAACTATAGCTACTAGTCTTAACATTGCAACCCA 83 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 41 CGTGTACCTTCTCCATCCAAAGATGGCAACTATAGCTACTGGTCTTAACATTGCAACCCA 100 Query 84 ACGTGTCATCGTCACCAGCGAGAATAGACCAGTTCGTCTCGCCGGTCCAGTCCATCTGAA 143 |||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| |||| Sbjct 101 GCGTGTCTTCGTCACCAGCGAGAATCGGCCAGTTTGTCTCGCCGGTCCGGTCCATTTGAA 160 Query 144 CAATCCGTGGAATCTTGGGTCAAGAACAACCAACCGGATGGTGAAACTTAAGCCGATTAG 203 |||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| Sbjct 161 CAATTCGTGGAATCTTGGGTCAAGAACAACTAACCGGATGATGAAACTTCAGCCGATTAA 220 Query 204 AGCAGCACCGGAAGGAGGGATATCGGATGTAGTGGAGAAAAGCATTAAGGAAGCTCAAGA 263 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 221 AGCAGCACCGGAAGGAGGGATATCGGACGTAGTGGAGAAAAGCATTAAGGAAGCTCAGGA 280 Query 264 GACTTGTGCGGGCGATCCTGTGAGCGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGA 323 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 281 GACTTGTGCGGGCGATCCTGTGAGTGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGA 340 Query 324 ACTTAGCGCTGCAGCTAGCCATGCTAGAGACAAGAAGAAAGCTGATGGTTCGGACCCTTT 383 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 341 ACTTAGCGCAGCAGCTAGCCATGCTAGAGACAAGAAGAAGGCTGATGGTTCGGACCCTTT 400 Query 384 GGAGGAATACTGCAAAGATAACCCTGAGACGAACGAGTGCCGTACTTACGACAACTGAAG 443 |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 401 GGAGGAATACTGCAAAGACAATCCTGAGACCAACGAGTGCCGTACTTACGACAACTGAAG 460 Query 444 CGATCAAGATCATGTTCC 461 ||||||||||| |||||| Sbjct 461 CGATCAAGATCCTGTTCC 478 Score = 102 bits (55), Expect = 3e-21 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 462 TCTCAATTACCTCTAGAAACATTTGTAATTTGTAGTTCCATAAACGAATACAAAAGTCAA 521 ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 554 TCTGAATTAGCTCTAAAAACATTTGTAATTTGTAGTTCCATAAACGAATACAAAAGCCAA 613 Query 522 AATTTCA 528 ||||||| Sbjct 614 AATTTCA 620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25267775941 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5