BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486746

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62410.1 | Symbols: CP12-2, CP12 | CP12 domain-containing pr...   682    0.0  


> AT3G62410.1 | Symbols: CP12-2, CP12 | CP12 domain-containing 
protein 2 | chr3:23090944-23091566 FORWARD LENGTH=623
Length=623

 Score =  682 bits (369),  Expect = 0.0
 Identities = 415/438 (95%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  24   CGTGTATCTTCTCCATCCAAAGATGGCAACTATAGCTACTAGTCTTAACATTGCAACCCA  83
            |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  41   CGTGTACCTTCTCCATCCAAAGATGGCAACTATAGCTACTGGTCTTAACATTGCAACCCA  100

Query  84   ACGTGTCATCGTCACCAGCGAGAATAGACCAGTTCGTCTCGCCGGTCCAGTCCATCTGAA  143
             |||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||||
Sbjct  101  GCGTGTCTTCGTCACCAGCGAGAATCGGCCAGTTTGTCTCGCCGGTCCGGTCCATTTGAA  160

Query  144  CAATCCGTGGAATCTTGGGTCAAGAACAACCAACCGGATGGTGAAACTTAAGCCGATTAG  203
            |||| ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| 
Sbjct  161  CAATTCGTGGAATCTTGGGTCAAGAACAACTAACCGGATGATGAAACTTCAGCCGATTAA  220

Query  204  AGCAGCACCGGAAGGAGGGATATCGGATGTAGTGGAGAAAAGCATTAAGGAAGCTCAAGA  263
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  221  AGCAGCACCGGAAGGAGGGATATCGGACGTAGTGGAGAAAAGCATTAAGGAAGCTCAGGA  280

Query  264  GACTTGTGCGGGCGATCCTGTGAGCGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGA  323
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  281  GACTTGTGCGGGCGATCCTGTGAGTGGAGAGTGTGTAGCTGCGTGGGACGAGGTTGAAGA  340

Query  324  ACTTAGCGCTGCAGCTAGCCATGCTAGAGACAAGAAGAAAGCTGATGGTTCGGACCCTTT  383
            ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  341  ACTTAGCGCAGCAGCTAGCCATGCTAGAGACAAGAAGAAGGCTGATGGTTCGGACCCTTT  400

Query  384  GGAGGAATACTGCAAAGATAACCCTGAGACGAACGAGTGCCGTACTTACGACAACTGAAG  443
            |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct  401  GGAGGAATACTGCAAAGACAATCCTGAGACCAACGAGTGCCGTACTTACGACAACTGAAG  460

Query  444  CGATCAAGATCATGTTCC  461
            ||||||||||| ||||||
Sbjct  461  CGATCAAGATCCTGTTCC  478


 Score =  102 bits (55),  Expect = 3e-21
 Identities = 63/67 (94%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  462  TCTCAATTACCTCTAGAAACATTTGTAATTTGTAGTTCCATAAACGAATACAAAAGTCAA  521
            ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  554  TCTGAATTAGCTCTAAAAACATTTGTAATTTGTAGTTCCATAAACGAATACAAAAGCCAA  613

Query  522  AATTTCA  528
            |||||||
Sbjct  614  AATTTCA  620



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5