BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486762
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62650.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 998 0.0
> AT3G62650.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G47485.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr3:23168061-23169187 FORWARD LENGTH=742
Length=742
Score = 998 bits (540), Expect = 0.0
Identities = 632/675 (94%), Gaps = 11/675 (2%)
Strand=Plus/Plus
Query 46 CTATCGAGAGTGATGGAGATAACGCCGAAGAGGTACTGGCGGAGGTGGAGAGGATACGAG 105
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 74 CTATAGGGAGTGATGGAGATAACGCCGAAGAGGTACTGGAGGAGGTGGAGAGGATACGAG 133
Query 106 AAGCTTGATGGGTCATCAGAGACGAGTTCGGGTCGAAGGAAAGGTAAACGGATCAAAATG 165
||||||||||||||||| ||||||| |||||||||||||||||| ||| || ||||||||
Sbjct 134 AAGCTTGATGGGTCATCGGAGACGACTTCGGGTCGAAGGAAAGGCAAAAGGGTCAAAATG 193
Query 166 GATCCGACCCGCAAGAAACGTTTTTGGAGGATCAAGATTGTGCCGAAACTGAGGATCCTC 225
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GATCCGACTCGCAAGAAACGTTTTTGGAGGATCAAGATTGTGCCGAAACTGAGGATCCTT 253
Query 226 AAAACGGCGACGCCGAAGAAGTTTTTGGTGTGGCTACGTGATTCATATGTTAAGATGATG 285
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 254 AAAACGGCGTCGCCGAAGAAGTTCTTGGTGTGGCTACGTGATTCATATGTTAAGATGATG 313
Query 286 ATGCGTTTGGCTAACTCACGGGTAGTCGGATCTTCTGGATACGGTGGATCCGGATTCGGG 345
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 314 ATGCGGTTGGCTAACTCACGGGTTGTTGGATCTTCTGGATACGGTGGATCCGGATTCGGG 373
Query 346 TCGGGTCAAATGAAGGAGTACGATGAGAAAATGCTTGTGGAGATTTACAAGTCGATACTG 405
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TCAGGTCAGATGAAGGAGTACGATGAGAAAATGCTTGTGGAGATTTACAAGTCGATACTG 433
Query 406 ATGGCGCAGGCGCAGGGGAATCTCGTGCACCGCCAAACACCTAATAATAATCATAAGCTT 465
|||| |||||||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 434 ATGGTGCAGGCGCAGGGGAATCTCGTGCACCGCGACACACCTAATAATAATCTTAAGCTT 493
Query 466 CCTTCTGAACCAGCGGTTGTCTCTGTCGTATCTTCTGTTGTTACTTGTTAGGTAATAAAG 525
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 CCTTCAGAACCAGCGGTTGTCTCTGTCGTATCTTCTGTTGTTACTTGTTAGGTAATAAAG 553
Query 526 AACAAACAATTATCCttttttttCTTTATAATAAATTTCCAATGTTAAGAATCAAAATTG 585
|||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||
Sbjct 554 AACAAACAATTATCCTTTCTT--CTTTACGATAAATTTCCAATGTTGAGAATCAAAATTG 611
Query 586 TTGACTTGTTTGATACTATTTCGAGATTGATGATTGGCAAAGTT-GTGATTTTGATCTGT 644
|||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 612 TTGACTTGCTTGATACTATTTCGAGATTGATGATAGGCAAAGTTTGTGATTTTGATTTGT 671
Query 645 ATCAAATTTATAAACa-a-aaaaaTTAGTACAATAAAGAAAGAAATAGTACAATAAATAG 702
|||||||||||| | | | |||||| ||||||| ||||||||||| | | ||||| |||
Sbjct 672 ATCAAATTTATATATATATAAAAAT-AGTACAAGAAAGAAAGAAA--G-A-AATAA-TAG 725
Query 703 ATGGTGGATTGTGGG 717
|||||||||||||||
Sbjct 726 ATGGTGGATTGTGGG 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5