BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486783 Length=1209 Score E Sequences producing significant alignments: (Bits) Value AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding prote... 1144 0.0 > AT3G62800.1 | Symbols: DRB4 | double-stranded-RNA-binding protein 4 | chr3:23225592-23227512 REVERSE LENGTH=1302 Length=1302 Score = 1144 bits (619), Expect = 0.0 Identities = 789/869 (91%), Gaps = 19/869 (2%) Strand=Plus/Plus Query 294 AAATTGCTCAGAAAGAGAATTCTATGTTACCAGTTTATGCAACTGCTACTTCTGGTCCAT 353 ||||||| |||||||||| |||| |||||||| |||||||||||||||| |||||||||| Sbjct 343 AAATTGCACAGAAAGAGAGTTCTCTGTTACCATTTTATGCAACTGCTACATCTGGTCCAT 402 Query 354 CGCATTCGCCTACTTTTATTTCGACTGTTGAGTTTGCTGGGAAGGTTTTCACCGGAGAAG 413 ||||| |||||||||||| ||| ||||||||||||||||| || ||||||| ||||||| Sbjct 403 CGCATGCGCCTACTTTTACTTCAACTGTTGAGTTTGCTGGTAAAGTTTTCAGTGGAGAAG 462 Query 414 AGGCAAAAACCAAAAAGTTGGCTGAAATGAGTGCTGCTAAAATTGCATTCATGAGTATAA 473 |||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 463 AGGCGAAAACCAAAAAGTTGGCTGAAATGAGCGCTGCTAAAGTTGCATTCATGAGTATCA 522 Query 474 AAAATGGGAACTCGAACCAAACCTCATCGCCTTCTTTGTCTTGTGAGAGACAAGAAGCTG 533 ||||||||||||||||||| ||| ||||||| ||||| || ||||||||||||||| || Sbjct 523 AAAATGGGAACTCGAACCAGACCGGATCGCCTACTTTGCCTAGTGAGAGACAAGAAGATG 582 Query 534 TAAGTTCAAATGTGAAGAGCAGTCTACAAGAGATCCATTCCCAA-C--CTTCCAAGGTGG 590 ||| |||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| Sbjct 583 TAAATTCAAATGTGAAGAGCAGTCCACAAGAGATCCATTCTCAACCTTCTTCCAAGGTGG 642 Query 591 TGATGACCCCTGATGCCCCATCAAAGTTGATGAAAGTGTCTGAAGATGAATGTCCAGATC 650 |||||||||||||| ||||||||||| ||| |||||| ||||||||||| |||||||| Sbjct 643 TGATGACCCCTGATACCCCATCAAAGGGGATTAAAGTGAATGAAGATGAATTTCCAGATC 702 Query 651 TTCATAG-TGCACCAGCCAGTAATGCTAAGGAAATTAACGTTGCTTTGCATGTGCCTGAA 709 ||||| | |||||||||||||||||||||||| ||||||||||||||| ||| |||||| Sbjct 703 TTCAT-GATGCACCAGCCAGTAATGCTAAGGAGATTAACGTTGCTTTGAATGAGCCTGAG 761 Query 710 AATCCTGCAAACGATGGTACTCTTAATGCACCAACTACTGATGGTATGAAGATGAACATT 769 |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 762 AATCCTACAAACGATGGTACTCTTAGTGCACTAACTACTGATGGTATGAAGATGAACATT 821 Query 770 GCTGCTTCTTCTTCT-CCTATACCTCAGAATCCTACAAACGTTGTTACTCTTAATGCATC 828 ||| ||||||||| | ||||||||||| ||||||||||||||| |||||||||||||| | Sbjct 822 GCTTCTTCTTCTT-TGCCTATACCTCACAATCCTACAAACGTTATTACTCTTAATGCACC 880 Query 829 ATCTACCAATGGTATCAAGAGGAACATTGCTGCTTGTTCTTCGCGTATGCCTCAGCATCC 888 | || |||||||||||||||||||||||||||||||||||||| | ||||||||| |||| Sbjct 881 AGCTGCCAATGGTATCAAGAGGAACATTGCTGCTTGTTCTTCGTGGATGCCTCAGAATCC 940 Query 889 CACAAACGATGGTAGTGAAACATCATCA--TGT-GTAGATGAGAGTGAGAAGAAGAAGCT 945 |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 941 CACAAACGATGGTAGTGAAACATCATCATGTGTAGTAGATGAGAGTGAGAAAAAGAAGCT 1000 Query 946 CATAATGGGAACTGGCCACCTGAGTATACCAACTGGCCAACATGTAGTTTGTCGTCCGTG 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1001 CATAATGGGAACTGGCCACCTGAGTATACCAACTGGCCAACATGTAGTTTGTCGCCCATG 1060 Query 1006 GAACCCGGAGATAACTCTTCCTCAAGACGCGGAGATGCTCTTTAGGGATGATAGATTTAT 1065 |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 1061 GAACCCCGAGATAACTCTTCCTCAAGACGCGGAGATGCTCTTTAGAGATGATAAATTTAT 1120 Query 1066 TGCCTATCGTCTCGGGAAGCCATAAAGACATCATC--CTT-GATGCATAA-A-GTGTAGA 1120 ||||||||||| | |||||||||| ||||||||| ||| ||||||||| | ||||||| Sbjct 1121 AGCCTATCGTCTTGTGAAGCCATAACGACATCATCATCTTTGATGCATAATAAGTGTAGA 1180 Query 1121 GA-ATA-T-T-AAGCTAAGCTATATCTCA 1145 || | | | | ||| |||||||||||||| Sbjct 1181 GATAGAATGTTAAGGTAAGCTATATCTCA 1209 Score = 353 bits (191), Expect = 2e-96 Identities = 248/274 (91%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 24 CTCGAGTGTGTCTTCACCATTAC-AA-AG---AGATAAAGATGGATCATGTATACAAGGG 78 ||||| |||||||||||||| | || || ||||| ||||||||||||||||||| || Sbjct 39 CTCGA-AGTGTCTTCACCATTTCAAAGAGTTTAGATAGAGATGGATCATGTATACAAAGG 97 Query 79 TCAATTGCAAGCATATGCCCTGAAACATAATCTGGAGCTACCGGTGTATGCCAATGAGCG 138 |||| ||||||| ||||||||| ||||||||||||||||||| |||||||| |||||| | Sbjct 98 TCAACTGCAAGCGTATGCCCTGCAACATAATCTGGAGCTACCAGTGTATGCGAATGAGAG 157 Query 139 AGAAGGGCCTCCTCATGCTCCTCGATTTAGATGTAAGGTTACATTCTGTGGACAGACTTT 198 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct 158 AGAAGGGCCTCCTCATGCTCCTAGATTTAGATGTAATGTTACATTCTGTGGACAGACTTT 217 Query 199 CCAGAGC-CTGGAATTCTTTCCGACACTTAAATCGGCTGAACATGCCGCTGCGAAAATTG 257 ||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 218 CCAGAGCTCTG-AATTCTTTCCGACACTAAAATCGGCTGAACATGCCGCTGCAAAAATTG 276 Query 258 CA-TTGGCTTCATTGACGCCACAGAGTCCAGAGG 290 || ||| |||| ||||||||||| |||||||||| Sbjct 277 CAGTTG-CTTCTTTGACGCCACAAAGTCCAGAGG 309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59387244735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5