BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486805
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63010.1 | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases s... 2148 0.0
> AT3G63010.1 | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases
superfamily protein | chr3:23289425-23291486 FORWARD LENGTH=1857
Length=1857
Score = 2148 bits (1163), Expect = 0.0
Identities = 1455/1587 (92%), Gaps = 55/1587 (3%)
Strand=Plus/Plus
Query 214 ACTATGGCTGGTGGAAACGAAGTCAACCTTAACGAATGCAAGAGAATTGTCCCACTCAAC 273
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ACTATGGCTGGTGGTAACGAAGTCAACCTTAACGAATGCAAGAGAATTGTCCCACTCAAC 349
Query 274 ACATGGGTCCTCATTTCCAATTTCAAGCTTGCTTACAAAGTCCTCCGTCGTCCTGACGGT 333
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 350 ACATGGGTCCTCATTTCCAATTTCAAGCTTGCTTACAAAGTCCTCCGTCGCCCTGACGGT 409
Query 334 TCCTTCAACCGCGACCTCGCCGAGTTTCTTGACCGTAAAGTTCCCGCTAACACTTTCCCT 393
|| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 410 TCTTTCAACCGCGACCTCGCCGAGTTCCTTGACCGTAAAGTTCCCGCCAACTCTTTCCCC 469
Query 394 GTCGACGGCGTTTTCTCCTTCGATCACGTCGACTCTGCCACTAACCTTCTCACCAGAATC 453
|||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 470 CTCGACGGCGTTTTCTCCTTCGACCACGTCGACTCAACAACTAACCTTCTCACCAGAATC 529
Query 454 TACCAACCTGCCTCTCTCCTTGACCTGACCCGTCTCGGAACCCTCGAGCTTACCAAACCT 513
||||||||||| ||||||||| | | |||||||| ||||||||||||||| |||||||||
Sbjct 530 TACCAACCTGCGTCTCTCCTTCATCAGACCCGTCACGGAACCCTCGAGCTAACCAAACCT 589
Query 514 CTCAGCACTACAGAGATCGTCCCTGTTCTCATTTTCTTCCATGGAGGTAGCTTCACTCAT 573
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 CTCAGTACTACAGAGATCGTCCCTGTTCTCATTTTCTTCCATGGAGGCAGCTTCACTCAT 649
Query 574 TCCTCGGCCAATAGTGCCATCTACGACACTTTCTGCCGACGCCTTGTCACCATTTGCGGT 633
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TCCTCCGCCAATAGTGCTATCTACGACACTTTCTGCCGACGCCTTGTCACCATTTGCGGT 709
Query 634 GTTGTTGTTGTCTCTGTTGATTACCGGAGATCGCCTGAGCATCGGTATCCTTGTGCTTAC 693
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 710 GTTGTTGTTGTCTCTGTTGATTACCGGAGATCCCCTGAGCATCGCTACCCTTGTGCTTAC 769
Query 694 GACGATGGATGGAATGCTCTCAAATGGGTCAAGTCCAGAGTCTGGCTTCAGAGTGGTAAA 753
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 770 GACGATGGATGGAACGCTCTCAACTGGGTCAAGTCCAGAGTCTGGCTTCAGAGTGGTAAA 829
Query 754 GACTCCAACGTTTATGTTTATTTGGCTGGAGATAGCTCAGGAGGCAACATAGCTCACAAT 813
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 830 GACTCCAATGTTTATGTTTATTTGGCTGGAGATAGCTCTGGAGGCAACATTGCTCACAAT 889
Query 814 GTTGCTGTGAGAGCAACCAAAGAAGGAGTCAAAGTGTTGGGGAACATTCTTCTTCACCCA 873
|| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 890 GTCGCTGTCAGAGCTACCAATGAAGGAGTCAAAGTGTTGGGGAACATTCTTCTTCATCCA 949
Query 874 ATGTTTGGTGGACAAGAGAGGACTGAGTCTGAGAAGAGCCTTGATGGCAAATACTTTGTG 933
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 950 ATGTTTGGTGGACAGGAGAGGACTCAGTCTGAGAAGACCCTTGATGGCAAATACTTTGTG 1009
Query 934 ACTATACAAGATCGAGATTGGTATTGGAGGGCTTATTTACCTGAAGGTGAAGATAGAGAT 993
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1010 ACTATACAAGATCGAGATTGGTATTGGAGGGCTTATCTACCGGAAGGTGAAGATAGAGAT 1069
Query 994 CATCCAGCATGTAATCCCTTTGGCCCGAGAGGTCAAAGCCTTAAAGGTGTCAACTTTCCC 1053
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1070 CATCCAGCATGTAATCCCTTTGGCCCGAGAGGTCAAAGCCTTAAAGGAGTCAACTTTCCA 1129
Query 1054 AAGAGTCTTGTTGTTGTGGCTGGTTTAGATCTTGTTCAGGATTGGCAATTTGCTTACGTG 1113
||||||||||||||||| |||||||||||||||||||| ||||||||||| || || |||
Sbjct 1130 AAGAGTCTTGTTGTTGTCGCTGGTTTAGATCTTGTTCAAGATTGGCAATTAGCCTATGTG 1189
Query 1114 GATGGCCTTAAGAAGAATGGTCTTGAAGTGAATCTTTTGTATTTGAAACAAGCTACCATC 1173
||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1190 GATGGGCTTAAGAAGACTGGTCTTGAAGTCAATCTTTTGTATTTGAAACAAGCTACCATT 1249
Query 1174 GGGTTTTACTTCTTGCCTAACAATGATCACTTTCATTGTCTTATGGAAGAGTTGAAAAAG 1233
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1250 GGCTTTTACTTCTTGCCTAACAATGATCACTTTCATTGTCTTATGGAAGAGTTGAATAAG 1309
Query 1234 TTTGTGCACCCCATAGAGGATTCTCAAAGCAAGTCAAGTCCTTTGCTTCTTACTCCGTAG 1293
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1310 TTTGTGCACTCCATAGAGGATTCTCAAAGCAAGTCAAGTCCTGTGCTTCTTACTCCTTAG 1369
Query 1294 GAACAACAACAACAAGGTCTAGTCATGTTGCTGATATATAC-A--T-AA-AG-AGAAGAA 1347
|||| |||| | ||| |||||||||||||||||||| | | || || |||||||
Sbjct 1370 ---CAACGACAAT--G-TCTGGTCATGTTGCTGATATATACCACATGAAGAGTAGAAGAA 1423
Query 1348 GAA-A---GAGGATCGGTTTGTTTTGCCTATATATCTATGAT-GGGTTTTTGTACAGTTT 1402
||| | ||||||||||||||||||||||| ||||||| ||||| | |||||||||
Sbjct 1424 GAAGACTAGAGGATCGGTTTGTTTTGCCTAT----CTATGATTGGGTTGT-GTACAGTTT 1478
Query 1403 CCACAAGTGTTGTCTAGTGTTTAGTAGCGTTTCTTTTGTGTTCCTTGGTCTCCGGAAGCA 1462
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1479 CCACAAGTGGTGTCTAGTGTTCAATAGCGTTTCTTTTGTGTTCCTTGGTCTCCGGAAGCA 1538
Query 1463 TAATA--T--G-------GT----T---G----CGCCTGACGAGAGATCACTTCGCTTAT 1500
||||| | | || | | |||||| ||||||| ||||||| ||||
Sbjct 1539 TAATAAGTCTGTCTTTCTGTGAGGTCTTGGTTGCGCCTGGCGAGAGACCACTTCGGTTAT 1598
Query 1501 CGGCATCTATCGGTTTAGGGCTATACCGGG-ACATTGTACTTTGTTTGCGTACTAGTATG 1559
|||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 1599 CGGCATCTATCGTTTTAGGGCTATACCGGGGA-ATGGTACTTTGTTTGCGTACTAGTATG 1657
Query 1560 GGTAGACTTTAATTAGCTGTAGCT-AGAGTACAGAGGGTAAATTACAAGACAACTAACTT 1618
||||| ||||| || | | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1658 GGTAGGCTTTAGTTGGTTCTAGCTTAGAGTACAGAGGGTAAATTACAAGACAACTAACTT 1717
Query 1619 GTCTTCAACATGTTGTGaaaaaaaCTTATCCTTGGTGTGGATTTGTATGTTGATATTAAC 1678
|||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 1718 GTCTTCAACATGTTGTGAAAAAAACTAATCCTTGGTGAGGATTTGTATGTTTATATTAAC 1777
Query 1679 TTT-GCTTTCTCATGCTATTAATAGAAATAGTATGTCTTTGTGGTTGTAGTTTCCCACCT 1737
||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 1778 TTTTGCTTTCTCATGCTATTAATAGA----GTATGTCTTTGTGGTTGTAGTTTCTCAC-T 1832
Query 1738 TCTTCTTCTTGTTTTAGTTCATGCATT 1764
|| |||||||||||||||||||||||
Sbjct 1833 TC--CTTCTTGTTTTAGTTCATGCATT 1857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5