BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486820
Length=3241
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like | chr3:23336092-23... 3408 0.0
> AT3G63180.1 | Symbols: ATTKL, TKL | TIC-like | chr3:23336092-23340236
REVERSE LENGTH=3238
Length=3238
Score = 3408 bits (1845), Expect = 0.0
Identities = 2337/2561 (91%), Gaps = 88/2561 (3%)
Strand=Plus/Plus
Query 700 AGAGAATTGCGGTTTAATCACTTGTAAAGCGAGAATCGACTCAGCCAACATTGATAAATT 759
||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 747 AGAGATTTGCGGTTTATTCACTTGTAAAGCGAGATTCGACTCAGCCAACATTGATAAATC 806
Query 760 GACCAACGGAACTAAAACATCGTTAGTAGTCGCCCATATTCACAAGGAGAAAGAACCAAG 819
|||||||||| ||||||| ||||||||||||| || | | | || | | |
Sbjct 807 GACCAACGGAGCTAAAACTTCGTTAGTAGTCG-CC----T--C-A-GATATTG-----TG 852
Query 820 GCTAGATTCGGAGGTGTCAAAAGGGGTATCAGATGGTCCACAATTGGAAAACAACAAAGT 879
| | || | | | | || |||||||||| |||||||||||||||||||||||||
Sbjct 853 GAT-GA---GAAAG-AAC-CAA-GGGTATCAGAGGGTCCACAATTGGAAAACAACAAAG- 904
Query 880 TTTTGAGAGTCATTCTACTAGTAGTAAGCTCGATATGGATCTCATGGTTCCTCCAACAAT 939
||||||||||| || | ||||||||||||||| |||||||||||||||||||| |
Sbjct 905 --ATGAGAGTCATTGTA-T--TAGTAAGCTCGATATTCATCTCATGGTTCCTCCAACATT 959
Query 940 GCCTTCCTCGCCAGGGAGAGTTTCTCTTCTTCCACTGGTTTCTGATTATTGCAAGGCAAG 999
||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 960 GCCTTCCTCTTCAGGGAGAGTTTCTCTTCTCCCACTCGTTTCTGATTATT-----GCAAG 1014
Query 1000 TCGAGATAGTTCTCTAAAGAGCAAAGAGAATG-TTAC--TC-----TCA-A-GACTCCAG 1049
||||||||| ||||||||||||||||||| | |||| || | | | || |||||
Sbjct 1015 -CGAGATAGTGCTCTAAAGAGCAAAGAGAA-GATTACTGTCAAGAATGAGATGAATCCAG 1072
Query 1050 AAGAAGTCAAACAGAAGAAGGTTGAAAAACGTGAATGGCTGAATCTTGATATAGAGGGTC 1109
||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| |
Sbjct 1073 AAGAAGTCAAACAAAAGAAGGTTGATAAACGTTACTGGCTGAATCTTGATATAGAGGGGC 1132
Query 1110 CGAACCAAGAGACTGGCAGAGACTCTAATTTAAGCTTACAGAATTTGGATTGGAGCCAAC 1169
|||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1133 CGAATCAAGAGACCGACAGAGACTCTAATTTAAGATTACAGAATTTGGATTGGAGCCAAC 1192
Query 1170 CTCAGCAGGCTAAATCTGCTCAGCATAGTTCAGTCTTACCTTTGCCAGTAGCTGTAGGCA 1229
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1193 CTCAGCAGGCTAAATCTGCTCCGCACAGTTCAGTCTTACCTTTGCCAGTAGCTGTAGCCA 1252
Query 1230 GCTCGCCTAGCGTGGTTCCTCCTCGGGGATATGTACCCCTGATCCAGACCGGTAAACCTG 1289
||| |||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct 1253 GCTGGCCTAGCGGGGTTCCTCCTCAGGGACATGTAGCCCTGATCCAGACCGGTAAACCTG 1312
Query 1290 TGGATGGGAGCAATGGATCTTCTACTTTGGTGCAGGGTGCT-CTATTCTCTGCCTCTCAG 1348
|||||| |||||||||||||||| || |||||||||||| | ||| ||||||||||||
Sbjct 1313 TGGATGAAAGCAATGGATCTTCTAAATTAGTGCAGGGTGCTCCAATT-TCTGCCTCTCAG 1371
Query 1349 CCTAGGCCTAAAAGGTGTGCCACACACTTTTTCATTGCTCGGAACATTCAGCTACATCAG 1408
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1372 CCTAGGCCTAAAAGGTGTGCCACACACTTTTTCATAGCTCGGAACATTCAGCTACATCAG 1431
Query 1409 CATTTCGTCAAAACAAACCATCTCTCTACACCAAACAAAGGTTCTGTTTATCTGAAAGGT 1468
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1432 CATTTCCTCAAAACAAACCATCTCCCTACACCAAACAAAGGTTCTGTTTATCTGAAAGGT 1491
Query 1469 GGTGACTTGAGGCCAGCCGCTGGAAACCCATCCTTGCAAGGAAGCTCTCCTATTCTCAGT 1528
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1492 GGTGACTTGAGGCCAACCGCTGGAAACCCATCCTTGCATGGAAGCTCTCCTATTCTCAGT 1551
Query 1529 TTAAACTCCCAGGCACACGATAGAATCGTAGATAATATTTCTGTGCTTAAGGATAAAGCC 1588
||||||||||| |||||| ||||| || |||||||||||||| || ||| | |||||||
Sbjct 1552 TTAAACTCCCAACCACACGTTAGAAACGGAGATAATATTTCTGCGCCTAATGTTAAAGCC 1611
Query 1589 TCTGAAAGTGGTCATTTTGCCTCAACCAGACAGAATAAACCTCAACCACCCCCTGCATCG 1648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TCTGAAAGTGGTCATTTTGCCTCAACCAGACAGAATAAACCTCAACCACCCCCTGCATCA 1671
Query 1649 ATTAGTGTAGTGCCTGCTCCTGCTTTCATCTTCCCCGCAAACCACCAATTGCAACCAGTC 1708
|||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1672 ATTAGTGTAGTGCCTGCTCCAGCTTTTATCTACCCCGCAAACCACCATTTGCAACCAGTC 1731
Query 1709 ATGGTACCTTCTAAATCTTCTCGCCCAACAAAGAGCCCACGTGTGGCTGTTGGTTCAGCA 1768
||||||||||||||||| ||||||||||| |||||||| | | |||||||||||| ||||
Sbjct 1732 ATGGTACCTTCTAAATCATCTCGCCCAACCAAGAGCCCCCATTTGGCTGTTGGTTTAGCA 1791
Query 1769 TCTGTTAACTTCACCCATCCAAGTTCATCAGCCAGCGAAGTTTCTTCTCCATACTTTACA 1828
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1792 TCTGCTAACTTCAGCCATCCAAGTTCATCAGCCAGCGAAGTTTCTTCTCCATACTTAACA 1851
Query 1829 GTTCTTCCAAACAATGCATATTCCTTTCAACTGTCATCAACCATCAGAGGTGGGACTCCA 1888
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GTTATTCCAAACAATGCATATTCCTTTCAACTGTCATCAACCATCAGAGGTGGGACTCCA 1911
Query 1889 AGCCAGGCGGTGCCTTTCTACAATGGGTCTTTTTACTCGCCGCAGATGTTCCAACAACAT 1948
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1912 AGCCAGGCGGTGCCTTTCTACAATGGGTCTTTTTACTCGCCTCAGATGTTCCAACAACCT 1971
Query 1949 CCTCAACCTCTGCAGAGACAGAGTCAAGCCCAAAGGGAGTCAAAGGCATCAAGCTGTTCC 2008
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1972 CCTCAGCCTCTGCAGAGACAGAGTCAAGCCCAGAGGGAGTCAAAGGCATCAAGCTGTTCC 2031
Query 2009 TCATCATCCCACAGGCAACCGCAACCGCAACCGCAAGTTAGTGTGAATAGTCTTTCAAGC 2068
||||| | || || | | | ||||||||||||||||||||||||||||||||||
Sbjct 2032 TCATC-TTCC-CA--C-A--G-----GCAACCGCAAGTTAGTGTGAATAGTCTTTCAAGC 2079
Query 2069 CAAGCTAATGTTCAACAACACCGTCAAATGTCACAAAAGTCTGAGGCTAAAGCAGCTGGA 2128
|||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||
Sbjct 2080 CAAGCTAATGTTCAGCAACACCGTCAAATGTCACAAAAGTTTGAGG-T-----AGCTGGA 2133
Query 2129 GATAACACTGATTCAAGGGGTAGCCACACTCAGAAAGGAGGCCCATTTAGCCAGATCATG 2188
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2134 GTTAACACTGATTCAAGGGGTAGCCACACTCAGAAAGGAGGCCCATTTGGCCAGATCATG 2193
Query 2189 ACAGCGCCTGTTCAACCACAAAACTTTTCCATGTCGTTTGCGTCTTTCGCCAACAGTGCT 2248
|||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2194 GCAGCCCCTGTTCAGCCACAAAACTTTTCCATGTCGTTTGCGTCTATCGCCAGCAGTGCT 2253
Query 2249 GCCCCTGCAACTCTGAATTTCTCCTCCAATGGCTATCACATCATCTCTACACCTCCTGGT 2308
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 2254 CCCCCTGCAACTCTGAATTTTTCCTCCAATGGCTAT--CA-CATCTCTACACCTCCTGGT 2310
Query 2309 GTTGCTCACCAGAAAAACCATCAATCAAGTGAGGCAAAGACTGGAGGTGGAAGCTGTTCA 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 GTTGCTCACCAGAAAAACCATCAATCAAGTGAGGCAAAGACTGGAGGTGGAAGCTGTTCA 2370
Query 2369 AGCAATGCCGAAGACCCGAAAAAGAATCTTCCAGGGAAGCCTCCAGGGATGATGAATGGA 2428
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2371 AGCAATGCCGAAGACCCGAAAAAGAATCTTCAAGGGAAGCCTCAAGGGATGATGAATGGA 2430
Query 2429 CAGACACTGGTTTTTGACAATCCATCGAGAACCCTCAACTTTGTTTCTGGTACTTGGCCT 2488
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 CATACGCTGGTTTTTGACAATCCATCGAGAACCCTCAACTTTGTTTCTGGTACTTGGCCT 2490
Query 2489 CCTCCTGCAGCAACAGCAATAAATGGAGACCCTTCAGTGTTTACCCAGCATCTTACGCAG 2548
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 2491 CCTCCTGCAGCAACAGCAATAAACGGAGACCCTTCAGTGTTTACGCAGCATCTCACGCAG 2550
Query 2549 AGACAGCAGCAATCTGGTCGGAGTAAAATGATGA---CTCATTCGCAGGCTGACTCTGTT 2605
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2551 AGGCAGCAGCAATCTGGTCGGAGTAAAATGATGATGACTCATTCGCAGGCTGACTCTGTT 2610
Query 2606 TCTGCCCCGTCATCCCAGTGGAAAAACCCTGCAACCTCATCGTCACTCACGTCCG-GTAC 2664
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 2611 TCTGCCACGTCATCCCAGTGGAAAAACCCTGCAACCTCATCATCACTCACGTC-GTGTAC 2669
Query 2665 TTCCTTAAACCTCAAGCAGTTCCAGTCGCAGCAGCAGACCAGAACACACGGACAGACACA 2724
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2670 TTCCTTAAACCTCAAGCAGTTCCAGTCGCAGCAGCAGATCAGAACACACGGACAGACACA 2729
Query 2725 GATTTCTTTTGCAGCACCATCAAATCCGCAGCCTTCTCAGGGGAAACAGGGGAGATCTGG 2784
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2730 GATTTCTTTTGCAGCACCAACAAATCCGCAGCCTTCTCAGGGGAAACAGGGGAGATCTGG 2789
Query 2785 TGGCTCTTCTTCTTCAGTCACTGGGTATGCTTCACATGGCAAAGCTGCAAACCCTAAGGT 2844
|||||||||| ||||||||||||||| |||||||||||||||| | || ||| |||||||
Sbjct 2790 TGGCTCTTCTCCTTCAGTCACTGGGTCTGCTTCACATGGCAAACCAGCGAACTCTAAGGT 2849
Query 2845 CAGCAATAGCAAAGCCTTGCCATTATCACCTGTTCCTTTGTCACGGGAACAGACAGAGAA 2904
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 2850 CAGCAATAGCAAAGCCTTGCTATTATCACCTGTTCCTTTGTCACAGGAACACACAGAGAA 2909
Query 2905 TTCAGCGTCCGGGTCGTCCCAGAAAACCTCTCCCGTTTGTGGAAGGACCGTGCCACCGAT 2964
| |||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2910 TCCAGCTTCCGGGTCGACCCAAAAAAACTCTCCCGTTTGTGGAAGGACCGTGCCACCGAT 2969
Query 2965 TATAACTTCGTGCCCGGGTCATCTGTCTGAGCTAAAGTACTAGTTCCAATTGAAGCAGAC 3024
||||||||||||||| ||||||||||| ||||| |||||||||||||| | |||||||||
Sbjct 2970 TATAACTTCGTGCCCTGGTCATCTGTCCGAGCTTAAGTACTAGTTCCA-TCGAAGCAGAC 3028
Query 3025 GTTTGAAGCCACCATTTTTGCAGTGTCTTGCTTCGAAATTAGGCAATTCCTAGATGAGGT 3084
|| ||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 3029 GTATGAAGCCACCATTTTTGCAGTGTCTAGCTTCGAATTTAGGCTATTCCTAGATGAGGT 3088
Query 3085 AATACCCTAATGGTTAGTAAAAGTACACCTCTTCTCCTTCTCTACGGAGTGAACGCTTTC 3144
|||||||||||||||||| ||||||| | ||||||| | | ||||||||||||||
Sbjct 3089 AATACCCTAATGGTTAGTGAAAGTAC-C-TCTTCTC-T-----AGGGAGTGAACGCTTT- 3139
Query 3145 GG-TCAGTATCTAAATTGTTTAATGTTTTATGGGGTCGATTGTTCTATCATTATGATTGG 3203
|| || ||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 3140 GGATCGGTATCTAAATTGTTTTATGTT--ATGGGGTCGATTGTTCTATCATTATGATTGG 3197
Query 3204 TCT---AGACACTAGTGTAGATATTTAGACTAACAAAACCC 3241
||| |||| ||||||||||||||||||||||||||||||
Sbjct 3198 TCTGGTAGACTCTAGTGTAGATATTTAGACTAACAAAACCC 3238
Score = 928 bits (502), Expect = 0.0
Identities = 617/668 (92%), Gaps = 25/668 (4%)
Strand=Plus/Plus
Query 48 AGCTTGCATTAATGGATAAAACCAGAGAAGCTCGAAGATCAACGACAACCATGGCTGCTT 107
|||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |
Sbjct 65 AGCTTGCATTAATGGATAAACCCAGGGAAGCTCGAAGATCAACGACAAACATGGCTGCAT 124
Query 108 CAAATGGAGTAACAAAACGGAGAAAGAGACTCTCAGAAAATAGTCGTGAGCAGATGCATC 167
|||| ||||| || |||||||| ||||| |||||||||| |||||||||||||||||||
Sbjct 125 CAAACGGAGTTACTAAACGGAGGCAGAGAATCTCAGAAAACAGTCGTGAGCAGATGCATC 184
Query 168 AGGAGGTGGCGACTGTGAGAGATCGACCAGGGAAGAAAGAGCGAGATCCGGAATCGTTCA 227
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 185 AGGAGGTGGCGACGGTGAGAGATCGACCGGGGAAGAAAGAGCGAGATCCGGAATCGTTCA 244
Query 228 ATCGGAGTAAGAGGAGACGAAGCGAGAGGTTCGCGCCGAGGAACGAGAGAGATGTGGAAG 287
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATCGGAGTAAGAGGAGAAGAAGCGAGAGGTTCGCGCCGAGGAACGAGAGAGATGTGGAAG 304
Query 288 AAGATAGCTCGGATGAGAGTCAAGGAGACGACGATGTTCAGCAAAATCATCAGAGGAAGA 347
||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 305 AAGATAGCTCGGATGAGAGTCAAGGAGACGACGAT-T--A------TCATCAGAGGAAGA 355
Query 348 GCTTCCCGTCGGGTCGAATCCCCAGGCATGCGGCGTCTTTGAAGGTCACCGATGAAATGA 407
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 356 GCTTCTCGTCGGGTCGAATCCCCAGGCATGCGGCGTCTTTGATGGTCGCCGATGAAATGA 415
Query 408 TCGGCGTAGCTGTCCCGAGAAAGGCTCGCTCAGCATGTATAAAGAGGTCGCATGACTGCC 467
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 416 TCGGCGTACCTGTCCCGAGAAAGGCTCGCTCAGCATGTTTAAAGAGGTCGCATGACTGCC 475
Query 468 GGACTTCGTCGGGAAGC----G-T------T-GTTTCACCGTCTTCTTCAACTCTTTCCG 515
||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 476 GGACTTCGTCGGGAAGCCATAGCTGCGAAGTCGTTTCACCGTCTTCTTCAACTCTTTCCG 535
Query 516 TCAA-GCAGAAGAA-GATTGTAAACGGATCCAAATCCCGGATACCCAAACCACCGAAATC 573
|||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCAAAG-AGA-GAAAGATTGTAAACGGATCCAAATCCCGGATACCCAAACCACCGAAATC 593
Query 574 CTCCGGCACGGTTGAGGACGACTTGGAGATCGAAATAGCAGAGGTGCTCTCCGGATTGAA 633
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 CTCCGGCACGGTTGAGGACGACTTGGAGATCGAAATAGCAGAGGTTCTCTCCGGATTGAA 653
Query 634 AAAGCAGCCTCGTAGCTCTAAGAGAGGAGACCATTCGGAGAATTCCCAAAAGTCATCCGA 693
||||||||||| |||||| |||||||||||| ||||||||||||| ||||| ||||| ||
Sbjct 654 AAAGCAGCCTCATAGCTCAAAGAGAGGAGACGATTCGGAGAATTCTCAAAAATCATCGGA 713
Query 694 GGTTAAAG 701
||||||||
Sbjct 714 GGTTAAAG 721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161236554802
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5