BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486866 Length=1803 Score E Sequences producing significant alignments: (Bits) Value AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoi... 2322 0.0 > AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452911-23456078 FORWARD LENGTH=1828 Length=1828 Score = 2322 bits (1257), Expect = 0.0 Identities = 1340/1381 (97%), Gaps = 2/1381 (0%) Strand=Plus/Plus Query 358 GGATGATACATGGGGTGCGCATCAAAGATGGGAAAGCTACTTATGTTTCTCGTTATGTTA 417 ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 331 GGATGATTCATGGGGTACGCATCAAAGATGGGAAAGCTACTTATGTTTCTCGATATGTTA 390 Query 418 AGACATCACGTCTTAAGCAGGAAGAGTTTTTCGGAGCTGCCAAATTCATGAAGATTGGGG 477 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 391 AGACATCACGTCTTAAGCAGGAAGAGTTCTTCGGAGCTGCCAAATTCATGAAGATTGGTG 450 Query 478 ACCTTAAAGGGTTTTTCGGATTGCTTATGGTCAATGTGCAACTGCTGAGAACGAAACTCA 537 ||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||| |||| Sbjct 451 ACCTTAAGGGGTTTTTCGGATTGCTAATGGTCAATGTCCAACAGCTGAGAACGAAGCTCA 510 Query 538 AAATATTGGACAACACTTATGGAAATGGAACTGCTAATACAGCACTCATATATCACCATG 597 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 511 AAATATTGGACAACACTTATGGAAATGGAACTGCCAATACAGCACTCGTATATCACCATG 570 Query 598 GAAAACTTCTAGCATTACAGGAGGCAGATAAGCCGTATGTCATCAAAGTTTTGGAAGATG 657 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 571 GAAAACTTCTAGCATTACAGGAGGCAGATAAGCCGTACGTCATCAAAGTTTTGGAAGATG 630 Query 658 GAGACCTGCAAACTCTTGGCATGATAGATTATGACAAGAGATTGACCCACTCCTTCACTG 717 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 631 GAGACCTGCAAACTCTTGGTATAATAGATTATGACAAGAGATTGACCCACTCCTTCACTG 690 Query 718 CTCACCCTAAAGTTGACCCGGTTACGGGTGAAATGTTTACATTCGGCTATTCCCATACGC 777 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 691 CTCACCCAAAAGTTGACCCGGTTACGGGTGAAATGTTTACATTCGGCTATTCGCATACGC 750 Query 778 CACCTTATCTCACATACAGAGTGATCTCGAAAGATGGCATTATGCATGACCCAGTCCCAA 837 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 751 CACCTTATCTCACATACAGAGTTATCTCGAAAGATGGCATTATGCATGACCCAGTCCCAA 810 Query 838 TTACTATATCAGAGCCTATCATGATGCATGATTTTGCTATTACTGAGACTTATGCAATCT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 811 TTACTATATCAGAGCCTATCATGATGCATGATTTTGCTATTACTGAGACTTATGCAATCT 870 Query 898 TCATGGATCTTCCTATGCACTTCAGGCCAAAGGAAATGCTGAAAGAGAAGAAAATGATAT 957 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 871 TCATGGATCTTCCTATGCACTTCAGGCCAAAGGAAATGGTGAAAGAGAAGAAAATGATAT 930 Query 958 ACTCATTTGATCCCACAAAAAAGGCTCGTTTCGGTGTTCTTCCACGCTATGCCAAGGATG 1017 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 931 ACTCATTTGATCCCACAAAAAAGGCTCGTTTTGGTGTTCTTCCACGCTATGCCAAGGATG 990 Query 1018 AACTCATGATTAGATGGTTTGAGCTTCCCAACTGCTTTATTTTCCACAACGCCAATGCTT 1077 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 AACTTATGATTAGATGGTTTGAGCTTCCCAACTGCTTTATTTTCCACAACGCCAATGCTT 1050 Query 1078 GGGAAGAAGAGGATGAAGTCGTCCTCATCACTTGTCGTCTTGAGAATCCAGATCTTGACA 1137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1051 GGGAAGAAGAGGATGAAGTCGTCCTCATCACTTGTCGTCTTGAGAATCCAGATCTTGACA 1110 Query 1138 TGGTCAGTGGGAAAGTGAAAGAAAAACTCGAAAATTTTGGCAACGAACTGTACGAAATGA 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 TGGTCAGTGGGAAAGTGAAAGAAAAACTCGAAAATTTTGGCAACGAACTGTACGAAATGA 1170 Query 1198 GGTTCAACATGAAAACGGGCTCAGCTTCTCaaaaaaaaCTATCGGCATCTGCGGTTGATT 1257 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1171 GATTCAACATGAAAACGGGCTCAGCTTCTCAAAAAAAACTATCCGCATCTGCGGTTGATT 1230 Query 1258 TCCCCAGAATCAACGAGGGCTACACCGGAAAGAAACAGAGATATGTATATGGAACAATTC 1317 ||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1231 TCCCCAGAATCAATGAGTGCTACACCGGAAAGAAACAGAGATACGTATATGGAACAATTC 1290 Query 1318 TGGACAGTATCGCAAAGGTTACCGGAATTATCAAGTTTGATCTGCATGCAGAAGCTGAGA 1377 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1291 TGGACAGTATCGCAAAGGTTACCGGAATCATCAAGTTTGATCTGCATGCAGAAGCTGAGA 1350 Query 1378 CAGGGAAAAGAATGCTGGAAGTAGGAGGCAATATCAAAGGAATATATGACCTGGGACAAG 1437 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1351 CAGGGAAAAGAATGCTGGAAGTAGGAGGTAATATCAAAGGAATATATGACCTGGGAGAAG 1410 Query 1438 GCAGATATGGTTCAGAGGCTATTTATGTCCCGCGTGAGGCAGCAGAAGAAGACGACGGTT 1497 |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| Sbjct 1411 GCAGATATGGTTCAGAGGCTATCTATGTTCCGCGTGAGACAGCAGAAGAAGACGACGGTT 1470 Query 1498 ACTTGATATTCTTTGTTCATGATGAAAACACAGGGAAATCATGCGTG-CATGTGATAGAC 1556 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1471 ACTTGATATTCTTTGTTCATGATGAAAACACAGGGAAATCATGCGTGAC-TGTGATAGAC 1529 Query 1557 GCAAAAACAATGTCGGCTGAACCTGTGGCTGTGGTGGAGCTGCCGCACAGGGTCCCATAT 1616 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1530 GCAAAAACAATGTCGGCTGAACCGGTGGCAGTGGTGGAGCTGCCGCACAGGGTCCCATAT 1589 Query 1617 GGCTTCCATGCCTTGTTTGTTACAGAGGAACAACTCCAGGAACAAACTCTTATATAAGCC 1676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1590 GGCTTCCATGCCTTGTTTGTTACAGAGGAACAACTCCAGGAACAAACTCTTATATAAGCC 1649 Query 1677 AAGCTGTGTGCATACACATATAATACTTCAGAGTCAGAGATGTGGAACTGGGTGATACTG 1736 |||||||||||||| ||| |||||||||| |||||||||||||| |||| |||||||||| Sbjct 1650 AAGCTGTGTGCATATACACATAATACTTCTGAGTCAGAGATGTGAAACTCGGTGATACTG 1709 Query 1737 A 1737 | Sbjct 1710 A 1710 Score = 503 bits (272), Expect = 3e-141 Identities = 296/308 (96%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 1 TTGCAGCAAAACAAACAATCATGGCGGAGAAGCTCAGTGATGGCAGCAGCATCGTCTCAG 60 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 10 TTGCAGCAAAACAAACAATCATGGCGGAGAAACTCAGTGATGGCAGCAGCATCATCTCAG 69 Query 61 TCAATCCTAAACCCTCCAAGGGTTTCTCCTCTAAGCTTGTTGATCTTCTGGAGAGACTTG 120 || |||||| ||||||||||||||||||||| |||||| | |||||||| |||||||||| Sbjct 70 TCCATCCTAGACCCTCCAAGGGTTTCTCCTCGAAGCTTCTCGATCTTCTCGAGAGACTTG 129 Query 121 TTGTCAAGCTCATGCACGATGCTTCTCTCCCTCTCCACTACCTCTCCGGCAACTTCGCTC 180 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 130 TTGTCAAGCTCATGCACGATGCTTCTCTCCCTCTCCACTACCTCTCAGGCAACTTCGCTC 189 Query 181 CCATCCGTGAAGAAACTCCTCCCGTCAAGGATCTCCCCGTCCATGGATTTCTTCCCGAAT 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 190 CCATCCGTGATGAAACTCCTCCCGTCAAGGATCTCCCCGTCCATGGATTTCTTCCCGAAT 249 Query 241 GCTTGAATGGTGAATTTGTGAGGGTTGGTCCAAATCCTAAGTTTGATGCTGTCGCTGGAT 300 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 250 GCTTGAATGGTGAATTTGTGAGGGTTGGTCCAAACCCCAAGTTTGATGCTGTCGCTGGAT 309 Query 301 ATCACTGG 308 |||||||| Sbjct 310 ATCACTGG 317 Score = 113 bits (61), Expect = 5e-24 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1737 ATACTGCCTCGTTTCTCTTTACATATAATTACATTTCATCCTCCAATATCAACAAGGTTT 1796 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1759 ATACTGCCTGGTTTCTCTTTACATATAATTACATTTCATCCTCCAATATCAACAAGGTCT 1818 Query 1797 CTACTTT 1803 ||||||| Sbjct 1819 CTACTTT 1825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89206368465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5