BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486867
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01010.2 | Symbols: | EXPRESSED IN: 23 plant structures; EX... 1777 0.0
AT1G81001.1 | Symbols: | unknown pseudogene | chr1:30425840-30... 298 1e-79
> AT5G01010.2 | Symbols: | EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s:
GOLD (InterPro:IPR009038); Has 85 Blast hits to 85 proteins
in 21 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi
- 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink). | chr5:1279-4994 REVERSE LENGTH=1619
Length=1619
Score = 1777 bits (962), Expect = 0.0
Identities = 1097/1159 (95%), Gaps = 21/1159 (2%)
Strand=Plus/Plus
Query 1 GCTTGGCTTGGCGGTGGCATGGAGCTCTGGGTTTGTGTGTGAGTGAGTAGATCGCGCAAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GCTTGGCTTGGCGGTGGCATGGAGCTCTGGATTTGTGTGTGAGTGAGTAGATCGCGCAAA 60
Query 61 GAATCTGAAAATGGCGTCAACGGAAGGCCTTATGCCTATCACCCGGGCTTTTCTCGCTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAATCTGAAAATGGCGTCAACGGAAGGCCTTATGCCTATCACCCGGGCTTTTCTCGCTTC 120
Query 121 TTACTACGACAAATATCCCTTCTCTCCTCTTTCCGACGACGTTTCTCGACTTTCCTCTGA 180
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TTACTACGACAAATATCCTTTCTCTCCTCTTTCCGACGACGTTTCTCGGCTTTCCTCTGA 180
Query 181 CATCGCTTCTCTTATTCAGCTACTAACCGTCCAATCTCCCCCTTCACAAGGTGAAACTTC 240
||| || ||||| ||| ||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 181 CATGGCATCTCTGATTAAGCTATTGACCGTCCAATCTCCCCCTTCACAAGGGGAAACTTC 240
Query 241 CCTGATTGACGAAGCAAACTGTCAGCCCCCTCACAAAATTGATGAGAATATGTGGAAAAA 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGATTGACGAAGCAAACCGTCAGCCCCCTCACAAAATTGATGAGAATATGTGGAAAAA 300
Query 301 TAGGGAGCAGATGGAGGAGATACTGTTTCTTCTGTCACCATCTCGCTGGCCTGTTCAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAGGGAGCAGATGGAGGAGATACTGTTTCTTCTGTCACCATCTCGCTGGCCTGTTCAGCT 360
Query 361 TCGGGAACCTTCCACATCCGAAGATGCTGAATTCGCTTCTATTTTGCGGACTCTCAAGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCGGGAACCTTCCACATCCGAAGATGCTGAATTCGCTTCTATTTTGCGGACTCTCAAGGA 420
Query 421 CAATTTTGATAACGCATTCACTGCTATGATTTCCTTCCAGACGATGAATTCCGAGCGCAT 480
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 CAGTTTTGATAACGCATTCACTGCTATGATTTCCTTCCAGACGAAGAATTCCGAGCGCAT 480
Query 481 ATTCAGCACAGTTATGACCTACATGCCTCAAGATTTCCGGGGGACGCTCATCAGACAGCA 540
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 481 ATTCAGCACAGTAATGACCTACATGCCTCAAGATTTCCGGGGAACGCTCATCAGACAGCA 540
Query 541 GAAGGAGAGGTCGGAGAGGAACAAACAGGCCGAGGTTGATGCGTTGGTTAGCTCTGGAGG 600
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 541 GAAGGAGAGGTCGGAGAGGAACAAACAGGCGGAGGTTGATGCGTTGGTCAGCTCTGGAGG 600
Query 601 GAGCATACGCGACACATACGCTCTTCTTTGGAAGCAGCAAATGGAGAGGAGGAGGCAGTT 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCATACGCGACACATATGCTCTTCTTTGGAAGCAGCAAATGGAGAGGAGGAGGCAGTT 660
Query 661 GGCTCAGCTAGGCTCTGCCACTGGTGTCTACAAAACCCTGGTCAAGTACTTGGTAGGGGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGCTCAGCTAGGCTCTGCCACTGGTGTCTACAAAACCCTGGTCAAGTACTTGGTAGGGGT 720
Query 721 TCCACAGGTGTTGTTGGATTTTATTCGACAAATAAATGATGACGATGGGCCAATGGAAGA 780
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 721 TCCACAGGTGTTGTTGGATTTTATTCGACAAATAAACGATGATGATGGGCCAATGGAAGA 780
Query 781 ACAGCGAGAACGTTACGGACCCCCTCTATACAGTCTCACAAAAATGAT-AGTCCCAGAAT 839
||||||||||||||| |||||||||||||||||||||||||||||| | | || || | |
Sbjct 781 ACAGCGAGAACGTTATGGACCCCCTCTATACAGTCTCACAAAAATGGTGA-TCGCA-ATT 838
Query 840 A---TTTTCCTAG---TT-T-TGGTTTA--T-TGTTG--TT-AA-C-GAGTAAAGACCAA 883
|||||||| || | ||| | | || | || || | |||||||||||||
Sbjct 839 CGGGTTTTCCTAACACTTCTGTGGGAAAGATATGATACCTTCAAACTGAGTAAAGACCAA 898
Query 884 ATGAATCTCCTGTCTGAAGCTGCTATAGTCTACACATCGGAGTTTGAAAGATTCGTCACA 943
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 899 ATGAATCTCCTGTCTGAAGCTGCTATAGTCTACACTTCTGAGTTTGAAAGATTCGTCACA 958
Query 944 TTTATCAGCGATGTATTTGCCAATTCCCCCTTCTTCATTTCAGCAGATACAGCTGGCATA 1003
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 959 TTTATCAGCGATGTATTCGCCAATTCCCCCTTCTTTATTTCAGCTGATACAGCTGGCATA 1018
Query 1004 TTG-GGCTCAAGGGATAATGAGGAGTACAAGGAGATAATCGTCCAAGCTGGGAGAACCTA 1062
||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1019 TTGTGG-TCAAGGGACAATGAGGAGTACAAGGAGATAATCGTTCAAGCTGGGAGAACCTA 1077
Query 1063 TGAAATCTCATTGATGGTGGAATCCGAAAATTCGTATATTGCTTGGGATTTCTCCTTGAT 1122
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1078 TGAGATCTCATTGATGGTGGAATCTGAAAATTCGTATATTGCTTGGGATTTCTCTTTGAT 1137
Query 1123 GCAAGGCAAGATAAGCATG 1141
|||||||||||||||||||
Sbjct 1138 GCAAGGCAAGATAAGCATG 1156
Score = 274 bits (148), Expect = 2e-72
Identities = 156/160 (98%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 1141 GGATATTGGATTTAGCGTGGAGTACATAAGTGCTTCAGGGGAAAAGACTCTGATATTACC 1200
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1279 GGATATCGGATTTAGCGTGGAGTACATAAATGCTTCAGGGGAAAAGACTCTGATATTACC 1338
Query 1201 TTACCGTCGGTATGAAGCTGATCAGGGCAACTTCTCTACGCTAATGGCTGGAAATTACAA 1260
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1339 TTACCGTCGGTATGAAGCTGACCAGGGCAACTTCTCTACGCTAATGGCTGGAAACTACAA 1398
Query 1261 ACTTGTTTGGGATAATTCATATTCAACTTTCTTCAAAAAG 1300
||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 ACTTGTTTGGGATAATTCATATTCAACTTTCTTCAAAAAG 1438
Score = 250 bits (135), Expect = 3e-65
Identities = 162/174 (93%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 1420 AAAGACTCTTCGATATAAAGTGGATTGCATACCACCGGTAGTGGA----G--CCAGAGCC 1473
|||||||||||||||||| |||||||||||| |||| |||||||| | ||||||||
Sbjct 1435 AAAGACTCTTCGATATAAGGTGGATTGCATAGCACCAGTAGTGGAGCCGGATCCAGAGCC 1494
Query 1474 GGAGCCGTTAAACTGAAAGTGGAAGATGAAGGTGGATTTTACAGTCATGAACACTCATCA 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GGAGCCGTTAAACTGAAAGTGGAAGATGAAGGTGGATTTTACAGTCATGAACACTCATCA 1554
Query 1534 TTTCTTTGTACAAGGATAAAACTCTGAACCCTTTGAAAGACATCAATGGAACTT 1587
|||||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1555 TTTCTTTGTAAAACGATAAAACTCTGAACCCTTTGAAATACATCAATGGAACTT 1608
> AT1G81001.1 | Symbols: | unknown pseudogene | chr1:30425840-30426557
REVERSE LENGTH=276
Length=276
Score = 298 bits (161), Expect = 1e-79
Identities = 182/192 (95%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 952 CGATGTATTTGCCAATTCCCCCTTCTTCATTTCAGCAGATACAGCTGGCATATTG-GGCT 1010
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 24 CGATGTATTCGCCAATTCCCCCTTCTTTATTTCAGCAGATACAGCTGGCATATTGTGG-T 82
Query 1011 CAAGGGATAATGAGGAGTACAAGGAGATAATCGTCCAAGCTGGGAGAACCTATGAAATCT 1070
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 83 CAAGGGATAATGAGGAGTACAAGGAGATAATCGTTCAAGCTGGGAGAACCTATGAGATCT 142
Query 1071 CATTGATGGTGGAATCCGAAAATTCGTATATTGCTTGGGATTTCTCCTTGATGCAAGGCA 1130
|||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 143 CATTGATGGTGGAATCTGAAAATTCGTATATTGCTTGGGATTTCTCTTTGACGCAAGGCA 202
Query 1131 AGATAAGCATGG 1142
|||||| |||||
Sbjct 203 AGATAACCATGG 214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78363050745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5