BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486870 Length=1598 Score E Sequences producing significant alignments: (Bits) Value AT5G01990.1 | Symbols: | Auxin efflux carrier family protein |... 2471 0.0 > AT5G01990.1 | Symbols: | Auxin efflux carrier family protein | chr5:377231-379911 REVERSE LENGTH=1749 Length=1749 Score = 2471 bits (1338), Expect = 0.0 Identities = 1529/1618 (94%), Gaps = 26/1618 (2%) Strand=Plus/Plus Query 1 aaaaaaaGAA-GTGTGTGTGGAAG-TTGGAACGGGCTTTTGGGCTTAGAAAAGGAAAGGA 58 ||||||| || || |||| ||||| || ||| |||||||||||||||||||||||||| | Sbjct 86 AAAAAAA-AAGGTATGTGGGGAAGTTTTGAAGGGGCTTTTGGGCTTAGAAAAGGAAAGAA 144 Query 59 GTAAAGAAAGAAGCGGCGCACGTGGCAGGCAATCACGAGAATCACGAGAGAGAAACAGAG 118 |||||| |||||||||||||||||||||||| |||||||| |||||||||| | ||| Sbjct 145 GTAAAGGAAGAAGCGGCGCACGTGGCAGGCAGTCACGAGAGTCACGAGAGATCGAGAGA- 203 Query 119 AGAtctct--ctctc-t-tctc-tcAAATC---A-ATCA--TCAGAGACTCCGATTCTCT 167 || ||| | |||| | |||| ||||||| | |||| ||||||||||||||||||| Sbjct 204 AG-TCTTTGATTCTCTTCTCTCATCAAATCAAAATATCATCTCAGAGACTCCGATTCTCT 262 Query 168 GTG-TT-TCCTCCACATTCCAACCCAAGTCCACCCTCAAAATTGTCAGAATGATTGCCCG 225 || || |||||||| || |||||||||||||||||||||||| ||||||||||||| || Sbjct 263 CTGTTTCTCCTCCACTTTTCAACCCAAGTCCACCCTCAAAATTCTCAGAATGATTGCTCG 322 Query 226 GATCCTTGCCGCCTTAGCCGATTCCATGGATATTCCGGTGGCTGCC---GGTGGATCAGT 282 |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||| Sbjct 323 GATCCTTGCCGCCTTAGCCGATTCCATGGAGATGCCGGTGGCTGCCGGTGGTGGATCAGT 382 Query 283 GCTGGGTACCATCAAAATCGCTGTGATGCCAATTGCCAAGGTTTTCACCATGTGCTTCTT 342 ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 383 GCTCGGTACCATCAAAATCGCTGTGATGCCAATTGCAAAGGTATTCACCATGTGCTTCTT 442 Query 343 GGGTCTTCTCATGGCCTCCAAGCACGTTAACATCTTGCCTCCCTCCGGCCGCAAACTCTT 402 |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 443 GGGTCTTCTCATGGCCTCCAAGTACGTTAACATCTTGCCTCCCTCTGGCCGCAAACTCTT 502 Query 403 GAACGGGTTGGTCTTCTCGCTTTTGCTTCCGTGCTTGATCTTTTCCCAGCTTGGACAAGC 462 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 503 GAACGGGTTGGTCTTCTCGCTTTTGCTTCCCTGCTTGATCTTTTCCCAGCTCGGACAAGC 562 Query 463 CGTCACTCTCCAAAAAATGCTTCAGTGGTGGTTCATTCCCGTGAACGTCGTTCTTGGCAC 522 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 563 CGTCACTCTCCAAAAAATGCTTCAGTGGTGGTTCATTCCCGTTAACGTCGTTCTTGGCAC 622 Query 523 CATCTCTGGCTCGACAATCGGTTTCATCGTTGCTTCCATCATTCGTCCCCCTTACCCTTT 582 |||||||||||| | ||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 623 CATCTCTGGCTCCATAATCGGTTTCATCGTTGCTTCCATCGTTCGTCCGCCTTACCCTTA 682 Query 583 TTTCAAGTTTACAATCATACAAATTGGAGTTGGCAATATTGGCAATGTGCCTCTTGTTTT 642 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 683 CTTCAAGTTTACAATCATACAAATTGGAGTTGGCAACATTGGCAATGTGCCTCTTGTTTT 742 Query 643 A-TTAGCGGCTCTATGTAGGGACACCTCCAACCCTTTTGGTGACTCCGAAAAATGTAGCA 701 | || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 743 ACTT-GCGGCTCTTTGTAGGGACACTTCCAACCCTTTTGGTGACTCCGAAAAATGTAGCA 801 Query 702 TTGATGGCACTGCTTATATCTCCTTTGGTCAATGGGTTGGTGCCATCATCCTCTATACAT 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 TTGATGGCACTGCTTATATCTCCTTTGGTCAATGGGTTGGTGCCATCATCCTCTATACAT 861 Query 762 ATGTGTACCAGATGTTTGCTCCTCCTCCAGAAGGGTTTGATGCTGAAGAAGAAAATCTTG 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 862 ATGTGTACCAGATGTTTGCTCCTCCTCCAGAAGGGTTTGATGCTGAAGAAGAAAATCTTG 921 Query 822 CTTTGAAAAACC-TTCCAGTAGATACTGCTCCAGAGCAAGTCCCCTTGCTTACTCAGAAT 880 |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 922 CTTT-AAAAACCCTTCCAGTAGATGCTGCTCCAGAGCAAGTCCCCTTGCTTACTCAGAAT 980 Query 881 TTTCCCAAGGACTTTTCGCCGATTCAAGATCTTTTACCTGTACAGAGCACCGAACCTAGA 940 |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 981 TTTCCCAAGGACTTTTCGCCGACTCAAGATCTTTTGCCTGTACAGAGCACCGAACCTAGG 1040 Query 941 GGAAGAGTGGTTTCAAGGAAAGGCAAGATTACACAGATCTTTGTTTTCCTCTATGAGAAG 1000 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1041 GGAAGAGGGGTTTCAAGGAAAGGCAAGATTGCACAGATCTTTGTTTTCCTCTATGAGAAG 1100 Query 1001 TTGAAACTGAAGCAAATTGTCCAGCCTGCAATAGTTGCTTCGATCCTTGCCATGATACTC 1060 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1101 CTGAAACTGAAGCAAATTGTCCAGCCTGCAATTGTTGCTTCGATCCTTGCCATGATACTC 1160 Query 1061 GGTGCAATACCTTTCACAAAGAAGTTGATATTCACAAATGGTGCACCTCTATTCTTCTTC 1120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 GGAGCAATACCTTTCACAAAGAAGTTGATATTCACAAATGGTGCACCTCTATTCTTCTTC 1220 Query 1121 ACAGACAGCTGCATGATTCTTGGGGACGCGATGATACCGTGTATCTTACTGGCACTgggg 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1221 ACAGACAGCTGCATGATTCTTGGGGACGCGATGATACCGTGTATCTTACTGGCACTGGGG 1280 Query 1181 gggAATCTCATTAACGGACCAGGAAGTTCAAAACTTGGTTTCAAGACAACGGCAGCTATT 1240 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1281 GGAAATCTCATTAACGGACCAGGAAGTTCAAAACTTGGTTTCAAGACAACAGCAGCTATT 1340 Query 1241 ATATTTGGACGGTTGGTGTTGGTGCCACCAGTAGGACTAGGAATAGTGACACTAGCAGAC 1300 ||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| Sbjct 1341 ATAATTGGACGGTTGGTGTTAGTGCCACCAGTAGGACTAGGAATCGTGACAGTAGCAGAC 1400 Query 1301 AAACTTGGGTTCCTTCCTGCTGACGATAAGATGTTCCGATTTGTGTTACTCCTTCAGCAC 1360 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1401 AAACTTGGGTTCCTTCCTGCTGATGATAAGATGTTCCGATTTGTGTTACTCCTTCAGCAC 1460 Query 1361 ACAATGCCTACATCAGTACTCTCAGGAGCTGTTGCCAACCTTAGAGGCTGTGGAAGGGAG 1420 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1461 ACAATGCCTACATCAGTGCTCTCAGGAGCTGTTGCCAACCTTAGAGGCTGTGGAAGGGAA 1520 Query 1421 TCAGCTGCTGTGCTATTCTGGGTCCACATTTTCTCCATCTTCTCAATGGCTGGATGGATA 1480 |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1521 TCAGCTGCTGTGCTCTTCTGGGTCCACATTTTCGCCATCTTCTCAATGGCTGGATGGATG 1580 Query 1481 GTACTGTACATCAACATACTCTTCTGAATTCTTCTTCTTATTGACACATTCATCTGCTAC 1540 ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1581 GTACTCTACATTAACATACTCTTCTGAATTCT-CTTCTTATTGACACATTCATCTGCTAC 1639 Query 1541 TATACAATACGTCGGTGTAAATACAGTGGCATCTCCTATGTGCCTGAACCAACCAAAA 1598 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1640 TATACAATACTTCTGTGTAAATACAGTGGCATCTCCTATGTGCCTGAACCAACCAAAA 1697 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78915256740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5