BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486871
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01980.1 | Symbols: | RING/U-box superfamily protein | chr5... 2615 0.0
> AT5G01980.1 | Symbols: | RING/U-box superfamily protein | chr5:375215-377208
FORWARD LENGTH=1868
Length=1868
Score = 2615 bits (1416), Expect = 0.0
Identities = 1710/1845 (93%), Gaps = 48/1845 (3%)
Strand=Plus/Plus
Query 1 CCCCCATCCGTCGTCGTTGACCCCCTTTCCGCCATAAAATCCCAACGCCTGTTTCTGCCA 60
|||||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 36 CCCCCATCCGTCGTCGTTGA-CCCCTTTCCGCCATAAAATCCCAAC-AC-----CTG--- 85
Query 61 TTTTCTTGCATCGAAACTAT--CC---CCTTGTTTGCTTGGACAGATGACTCCTTCCTAG 115
||||||||||||||||| || || |||||||||||||||||||||||||||| ||||
Sbjct 86 TTTTCTTGCATCGAAACCATCCCCTTGCCTTGTTTGCTTGGACAGATGACTCCTTGCTAG 145
Query 116 TTTTTTGAAGATCCGGGCGTATTTCTTCGACCTCAAAGTTGCTGCCTTTGGATCCGATGG 175
|||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 146 TTTTTTGAAGATCCGGCCGTATCTCTTCGACCTCAAAGCTGCCGCCTTTGGATCCGATGG 205
Query 176 AATCAC---CACC-TC--CGGGACCATCTAATGGGGAT-AGCAGCAATTCAATCCCATCT 228
|||||| ||| || || |||| |||| || ||||||||||||||||||||
Sbjct 206 AATCACAAGGACCTTCTAATGG-TCATCCCATGGATATCAGCAGCAATTCAATCCCATCG 264
Query 229 TCGGCCTGTAATCTGTGCGGAAGAGTCGTCCAATCTGCTTCCGATGATCTTGAAATCTTC 288
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 TCTGCCTGTAATCTGTGCGGAAGAGTCGTTCAATCTGCTTCCGATGATCTTGAAATCTTC 324
Query 289 AGCTTATGTGTCGACTGTAAGTTTTTGTTGCTTGAAGATTTCGGCACCCCCGCACCTCCC 348
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 325 AGCTTATGTGTCGACTGTAAGTTTTTGTTGCTTGAAGATTTCGGCACTCCCGCGCCTCCC 384
Query 349 TTGGCTCGGAGGCAGACAATTAGAaggaggaggatgaggaggaggacaaggaggagTAGG 408
||||||||| ||||||||||||| |||||||||||||||||||||| ||| | | ||||
Sbjct 385 TTGGCTCGGCGGCAGACAATTAGGAGGAGGAGGATGAGGAGGAGGAGAAGAACAACTAGG 444
Query 409 CACGACAGCTCTGA----GTC--TGTCGGTGATCTTTCCACCCAACAGTTCACACACTTG 462
|||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||
Sbjct 445 CACGACAGCTCTGAGTCTGTCGGTGTCGGTGATCTTTCCTCCCAACAATTCACACACTTG 504
Query 463 ATAAGCATGGCAAGACAAAGCCTTTCAACGGTTCATGCTAGTGAGGATCAACGTGGTGAC 522
|||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 505 ATAAGCATTGCAAGACAAAGCCTTTCAACGGTTCAAGCTAGTGAGGATCTACGTGATGA- 563
Query 523 CAGCAGCGCACTAGTTCCCATACCACTCCAAGCGGTTCTACAAGATGGAGAATCTTCTCA 582
| | ||| ||||| |||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 564 C--CTGCGAACTAGCTCCCATACCACTCCAAGCGGCTCGACAAGATGGAGACTCTTCTCA 621
Query 583 GAATCTGAAAGTGATGATTTTGACAACTTTGGCGAAACCGAATCAAACGCTAGTTTTAGC 642
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 622 GAATCTGAAAGTGATGATTTTGACAACTTTGGCGAAACCGAATCAAACGCTAGCTTTAGC 681
Query 643 CTCTACAGATTTCCCCATGCTGATAACGATGCCATTTCTTTTAGTGCTTACGGTGGAGAA 702
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 682 CTCTACAGATTTCCCCATGCTGATAACGATACCATTTCTTTTAGTGCTTACGGTGGAGAG 741
Query 703 TCTGATGCTTCCACGGACAGGCATGCTTTCCTGGATGCGGAAATCTTTGTTCAACCAGAC 762
||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 742 TCTGATGCTTCCACGGACAGGCATG----CC--GAT------ATCTTTGTTCAACCAGAT 789
Query 763 GACAGGAGCGACATTGACTTTGACACTGATATAGACCCGATGCATGCTGGTCTTAACCAG 822
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 790 GACAGGAGCGACATTGACTTTGACACTGATATAGACCCGATGCGCGCTGGTCTTAACCAG 849
Query 823 TGGAACTCAGACGAAGAAGACAGGGAATGGGAGGAAGGAGCGGGTCCATCTGGGGTTGCT 882
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 850 TGGAACTCAGACGAAGAAGACAGGGAATGGGAGGAAGGAGCGGGTCCTTCTGGGGTTGCA 909
Query 883 GGAACACGGTATAGAAACTATTTGGCTAGTCCAAGTGAGAGCTACAGCTCCATGACTCGG 942
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 910 GGAACACGCTATAGAAACTATTTGGCAAGTCCAAGTGAGAGCTACAGCTCCATGACTCGG 969
Query 943 TTTGATTCACCCGAGTTAGAGAGAGGCTTTCGTCAAAGAATTTTAGAGAGGAGGCAGGGG 1002
||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 970 TTTGATTCACCTGAGTTAGAGAGAAGCTTTCGTCAAAGAATTATAGAGAGGAGGCATTCG 1029
Query 1003 TTATCTCGCAACATCTTCACTGGTTTGGAGGATTTGGAGTTCTCTCCCTATGCTGCAAAT 1062
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1030 TTATCTCGCAACATCTTCACTGGTTTGGAGGATTTGGACTTCTCCCCCTATGCTGCAAAT 1089
Query 1063 GTTGCGGATTATCTTGATGAGAGAGGCTTTGAGGAACTGCTTGAGCAACTTGCTGAGTCT 1122
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1090 GTTGGGGATTATCTTGATGAGAGAGGCTTTGATGAACTGCTTGAGCAACTTGCTGAGTCT 1149
Query 1123 GACAATTCAAGAAGAGGTGCACCACCTGCATCTGTGTCATGCGTCGGGAATCTTCCAAGG 1182
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1150 GACAATTCAAGAAGAGGTGCACCACCTGCATCTGTCTCATGCGTCAGGAATCTTCCAAGG 1209
Query 1183 GTTATCATTGGAGAGGAGCATGTAATGAAGGGCTTAGTTTGTGCAATCTGCAAGGAGCTT 1242
|||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1210 GTTATCATTGCAGAGGAGCATGTAATGAAGGGCCTAGTTTGTGCGATCTGCAAGGAGCTT 1269
Query 1243 TTCACCCTCAGCAATGAAACCACGCAGCTTCCGTGTCTACATCTATACCATGCTCATTGT 1302
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TTCTCCCTCCGCAATGAAACCACGCAGCTTCCGTGTCTACATCTATACCATGCTCATTGT 1329
Query 1303 ATCGTACCTTGGCTGAGTGCCCGTAACTCCTGCCCACTCTGCCGTTATGAGCTCCCAACA 1362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1330 ATCGTACCTTGGCTGAGTGCCCGTAACTCCTGCCCACTCTGCCGTTATGAGCTCCCGACA 1389
Query 1363 GATGATAAAGATTACGAGGCCGGAAAGCATAATGTGCTGGATGTGAGCGAGGATAGCTCC 1422
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1390 GATGATAAAGATTACGAGGAGGGAAAGCGGAATGTGCTGGATGTGAGCGAGGATAGCTCC 1449
Query 1423 TC-TGGTGACGATGGCACAGAATCGGGGGAAGAGGAATATGTAGAGAGAGGTGAGAGCGA 1481
|| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TCCTC-TGATGATGGTACAGAATCGGGGGAAGAGGAATATGTAGAGAGAGGTGAGAGCGA 1508
Query 1482 CTCTGGTGTGAGCAGAGTTAGCAGAGGAAGATGGCTGTTTCTGGCTGCTGCACCAGTTGT 1541
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GTCTGGTGTGAGCAGAGTCAGCAGAGGAAGATGGCTGTTTCTGGCTGCTGCACCAGTTGT 1568
Query 1542 GAGTCTGGTGGGCGTTGTGTTGGCAATGTGGCTAAGCAACCAACAGAGGAGGGGTATAGC 1601
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1569 GAGTCTGGTGGGCGTTGTGTTGGCAATGTGGCTAAGCAGCCCACACAGGAGGGGTATAGC 1628
Query 1602 AATCTCTCATAGCCAAAGGGGGAATAGAACCAGAAGATGGCTGCCGTTTTTCTGACTGAT 1661
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1629 AATCTCTCATAGCCAAAGGGAGAACAGAACCAGAAGATGGCTGCCGTTTTTCTGACTGAT 1688
Query 1662 GCCCAGATCCGTAGGTGCCTCCAGAATCTGTATTTTTTCA-GACCCTTAAAAGATACTTG 1720
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1689 GCCCAGATCCGTAGGTGCCTCCAGAATCTGTATTTTTTTAAGACCCTTAAAAGATACTTG 1748
Query 1721 AGTTTCATCTGCTGTTTATCGACTTG-TACTGTTTCCACACGTTAGTTTTGATTGACGTT 1779
|||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1749 AGTTTCGTCTGCTGTTTATCGACTTGGTACTGTTTCCACACATTAGTTTTAATTGACGTT 1808
Query 1780 TAACTAAAGTTGTGCTGTTTGTCGTGTGTTGCAAATAATATTCTT 1824
|||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1809 TAACTAAAGTTGTGCTGTTTGTCGCGTGTTTCAAATAATATTCTT 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5