BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486874
Length=3241
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01950.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4811 0.0
> AT5G01950.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:364902-370186 REVERSE LENGTH=3387
Length=3387
Score = 4811 bits (2605), Expect = 0.0
Identities = 2945/3104 (95%), Gaps = 44/3104 (1%)
Strand=Plus/Plus
Query 147 AAGGGTTAAGCttttt-ttATGGCAGACAAGTCAAGATCAAA-C---CAAGCACCCATCA 201
|||| ||||||||||| ||||||||||||||||||||||| | ||| |||||||||
Sbjct 231 AAGGTTTAAGCTTTTTAAAATGGCAGACAAGTCAAGATCAAACCTAGCAAACACCCATCA 290
Query 202 AGGTCATTTCTTCCCCTTCTC-G-A--TTTATCTTATCCGCTTGCCTTTTTGGAAAA-T- 255
||| | || || || || | | | ||| |||||||||||||||||||||||||| |
Sbjct 291 AGG-GA-TT-TT-GCCATCCCAGAAGCTTTCTCTTATCCGCTTGCCTTTTTGGAAAATTC 346
Query 256 TC-T------C-A-T--T-G---TGCTGATCTCGACAGTGAGGCACCATGGTCTTCCCTC 300
|| | | | | | | |||||||||| | |||||||||||||||| |||||||
Sbjct 347 TCTTAGGGAACTAGTACTAGTATTGCTGATCTCAATAGTGAGGCACCATGGTGTTCCCTC 406
Query 301 AAAGACTCTATCCACATGCGCTCCTTGTTGCCTGTTGTTGCGTCCTTCTTCTTGCCGATG 360
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 407 AAAGACTCTATCTACATGCGCTCCTTGTTGCCTGTTGTTGCGTCCTTCTGCTTGCCGATG 466
Query 361 CACAAAGAACACACCCTTCAGAAGTCTCTTCTTTACGATCAGTTAAGAGAAGTCTAATTG 420
| |||||||| ||||||||||||||| || |||||||||| ||||| ||||||||| |||
Sbjct 467 CTCAAAGAACCCACCCTTCAGAAGTCACTGCTTTACGATCTGTTAAAAGAAGTCTACTTG 526
Query 421 ACCCTAAAGATTATTTGAGAAACTGGAACAGAGGAGACCCTTGCAGATCTAATTGGACTG 480
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 527 ACCCTAAAGATTATTTGAGAAACTGGAATAGAGGCGACCCTTGCAGATCAAATTGGACTG 586
Query 481 GAGTTATCTGCTTTAATGAGATTGGTACTGACGACTACCTGCATGTCCGAGAACTCCTGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GAGTTATCTGCTTTAATGAGATTGGTACTGACGACTACCTGCATGTCCGAGAACTCCTGC 646
Query 541 TGATGAATATGAATCTCTCCGGGAGTTTGTCACCAGAGCTCCGAAAATTAGCTCATCTCG 600
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 647 TGATGAATATGAATCTCTCCGGGACTTTGTCACCAGAGCTCCAAAAATTAGCTCATCTCG 706
Query 601 AAATATTAGATTTCATGTGGAATAATATAAGTGGTTCAATTCCAAACGAGATAGGACAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AAATATTAGATTTCATGTGGAATAATATAAGTGGTTCAATTCCAAACGAGATAGGACAGA 766
Query 661 TATCATCCCTGGTACTCTTGCTGCTGAATGGAAACAAACTTTCAGGGCCTTTACCAAGCG 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 767 TATCATCCCTGGTACTCTTGCTGCTGAATGGAAACAAACTTTCAGGGACTTTACCAAGCG 826
Query 721 AACTCGGGTATCTTTCGAACTTGAACAGGTTCCAGATAGATGAGAATAACATCACAGGAG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AACTCGGGTATCTTTCGAACTTGAACAGGTTCCAGATAGATGAGAATAACATCACAGGAC 886
Query 781 CAATACCAAAGTCATTTTCCAACTTGAAAAACGTGAAACATATTCACTTCAACAATAATT 840
||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 887 CAATACCAAAGTCCTTTTCCAACTTGAAAAAAGTGAAACATCTTCACTTCAACAATAATT 946
Query 841 CGTTGAGCGGCCAGATTCCAGTTGAGCTTTCCAATCTTACTAACATCTTTCATGTGCTGT 900
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CGTTGACCGGCCAGATTCCAGTTGAGCTTTCCAATCTTACTAACATCTTTCATGTGCTGC 1006
Query 901 TAGACAACAATAATTTATCTGGAAATCTTCCACCACAACTCTCTGCATTGCCGAACCTGC 960
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1007 TAGACAACAATAAATTATCTGGAAATCTTCCACCACAACTCTCTGCATTGCCAAACCTGC 1066
Query 961 AAATCCTGCAACTGGATAATAACAACTTCAGTGGATCTGATATCCCAGCTTCCTATGGAA 1020
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1067 AAATCCTGCAACTTGATAATAACAACTTCAGTGGATCCGATATCCCAGCTTCCTATGGAA 1126
Query 1021 ACTTTTCGAGTATTCTGAAGCTGAGTCTTAGAAATTGTAGTTTGAAAGGGACACTTCCTG 1080
||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1127 ACTTTTCGAATATTCTAAAGCTGAGTCTTAGAAATTGTAGTTTGAAAGGGGCACTTCCTG 1186
Query 1081 ATTTTAGCAAGATACGTCATCTCAAATACTTGGATCTTAGCTGGAATGAGCTCACAGGAC 1140
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 ATTTTAGCAAGATACGTCATCTCAAATACTTGGATCTTAGCTGGAATGAACTCACAGGAC 1246
Query 1141 CTATACCTTCTTCTAATCTTTCTAAGGCTGTGACAACCATTAATTTATCACACAACATAC 1200
|||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1247 CTATACCTTCCTCTAATTTTTCTAAGGATGTGACAACCATTAATTTATCAAACAACATAC 1306
Query 1201 TTAACGGATCCATCCCGCAGAGCTTCTCAGATCTCCCTTTACTTCAGATGCTATTGCTGA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TTAACGGATCCATCCCGCAGAGCTTCTCAGATCTCCCTTTACTTCAGATGCTATTGCTGA 1366
Query 1261 AAAACAATATGTTATCTGGATCTGTCCCTGATTCCCTTTGGAAGAATATCTCTTTTCCGA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AAAACAATATGTTATCTGGATCTGTCCCTGATTCCCTTTGGAAGAATATCTCTTTTCCGA 1426
Query 1321 AGAAAGCTAGACTTCTACTTGATCTTAGGAATAATTCTCTGTCACATGTTCAAGGAGATC 1380
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1427 AGAAAGCTAGACTTCTACTTGATCTTAGGAATAATTCTCTGTCACGTGTTCAAGGAGATC 1486
Query 1381 TAACTCCTCCACAAAATGTCACTTTAAGGCTTGATGGTAATCCGATCTGCACTAACGGAA 1440
||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 1487 TAACTCCTCCACAAAATGTCACTTTAAGGCTTGATGGCAATCTGATCTGCACTAATGGAA 1546
Query 1441 GCATATCAAACGCAAACCTATTCTGTGAGTCCAAAGGAAAAGAGTGGACATCACTACCAA 1500
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1547 GCATATCAAACGCAAACCTATTCTGTGAGTCCAAAGGCAAAGAGTGGATATCACTACCAA 1606
Query 1501 CCAACTCAACTAATTCTGCACTGGACTGTCCTCCTCTAGCCTGTCCCACTCCTGACTTCT 1560
||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1607 ACAATTCAACCAATTCTGCACTGGACTGTCCTCCTCTTGCCTGTCCCACTCCTGACTTCT 1666
Query 1561 ACGAATACAGTCCAGCATCCCCATTACGATGCTTTTGTGCAGCGCCTCTCAGAATTGGAT 1620
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1667 ACGAATACAGTCCAGCATCCCCATTACGATGCTTTTGTGCAGCGCCTCTTAGAATTGGAT 1726
Query 1621 ATCGTCTCAAAAGTCCTAGTTTCTCATACTTCCCTCCATATATTGATCAATTTGGCGAGT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 ATCGTCTCAAAAGTCCTAGTTTCTCATACTTCCCTCCATATATTGATCAATTTGGCGAGT 1786
Query 1681 ATGTTGCCGATTTCCTTCAAATGGAACCATATCAATTCTGGATCGACTCATATCAGTGGG 1740
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1787 ATGTTACCGATTTCCTTCAAATGGAACCATATCAACTCTGGATCGACTCATATCAATGGG 1846
Query 1741 AGAAAGGGCCTCGTCTGAGGATGTATTTGAAACTTTTTCCGAAAGTTAATGAAACCTATA 1800
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1847 AGAAAGGGCCTCGTCTGAGGATGTATCTGAAACTTTTTCCGAAAGTTAATGAAACCTATA 1906
Query 1801 CAAGAACATTTAACAAGAGTGAAGTTCTCAGAATCCGAGGCATATTCGCTTCATGGAGAT 1860
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 CAAGAACATTTAACGAGAGTGAAGTTCTCAGAATCCGAGGCATATTCGCTTCATGGAGAT 1966
Query 1861 TTCCTGGTAGTGACTTATTCGGTCCGTATGAACTGCTAAACTTCACTCTGCAGGGGCCTT 1920
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1967 TTCCTGGTAGTGACTTATTTGGCCCGTATGAACTGCTCAACTTCACTCTGCAGGGGCCTT 2026
Query 1921 ATTCATATGTTAACTTCAACAGTGAAAGGAAAGGCGT-AGGCTGGGGACGATTAGCAGCA 1979
||||||||||||||||||||||||||||||||||||| || |||| ||||||| ||||||
Sbjct 2027 ATTCATATGTTAACTTCAACAGTGAAAGGAAAGGCGTCAG-CTGGCGACGATTGGCAGCA 2085
Query 1980 ATAACTGCAGGGGCTGTGGTGACTGCTGTTGCGATATCCGCTGTGGTTGCAGCCTTGTTA 2039
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 ATAACTGCAGGGGCTGTGGTGACTGCTGTTGCGATATCCGCTGTGGTTGCAGCCTTGTTG 2145
Query 2040 CTTAGAAGATACAGCAAGCAAGAGCGAGAGATATCTAGAAGACGGTCTTCCTCGAAGGCT 2099
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2146 CTTAGAAGATACAGCAAGCACGAGCGAGAGATATCTAGAAGACGGTCATCCTCGAAGGCT 2205
Query 2100 TCCTTGATGAATTCTGGGATAAGAGGCTTTAGTTTCAAAGAACTAGCGGAGGCCACCGAC 2159
|||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2206 TCCTTGTTGAATTCTGGGATAAGAGGCTTTAGTTTCAAAGAGCTAGCAGAGGCCACCGAC 2265
Query 2160 GATTTTAGCAGCTCAACTTTGGTTGGACGCGGAGGCTATGGAAAGGTATACAGAGGTGTG 2219
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2266 GATTTTAGCAGCTCAACTTTGGTTGGGCGCGGAGGCTATGGAAAGGTTTACAGAGGTGTC 2325
Query 2220 TTATCTGACAAAACTGTTGCTGCAATAAAGCGAGCAGATGAAGGGTCTTTGCAAGGTGAA 2279
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2326 TTATCTGACAATACTGTTGCTGCAATAAAGCGAGCAGATGAAGGGTCTTTGCAAGGTGAA 2385
Query 2280 AAGGAGTTCTTGAATGAAATAGAGTTGCTCTCGAGGTTGCATCACCGGAATCTAGTGTCA 2339
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 2386 AAGGAGTTCTTGAATGAAATAGAGCTGCTCTCGAGGTTGCATCATCGGAATCTTGTGTCA 2445
Query 2340 CTGATTGGTTATTGTGACGAAGAAGGCGAGCAGATGCTGGTGTACGAATTTATGTCAAAT 2399
||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2446 CTGATCGGTTACTGTGATGAAGAAAGCGAGCAGATGCTGGTGTACGAATTTATGTCAAAT 2505
Query 2400 GGCACCTTGCGCGACTGGTTGTCTGCTAAGGGGAAGGAGTCATTGAGCTTTGTGATGAGG 2459
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2506 GGCACCCTGCGCGACTGGTTGTCTGCTAAGGGGAAGGAGTCATTGAGCTTTGGGATGAGG 2565
Query 2460 ATTCGTGTTGCGTTGGGAGCAGCGAAAGGTATTCTCTACCTTCACACAGAAGCCAACCCG 2519
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2566 ATTCGTGTTGCGTTGGGAGCAGCAAAAGGTATTCTCTACCTTCACACAGAAGCCAACCCG 2625
Query 2520 CCAGTTTTCCATCGAGACATCAAAGCCAGTAACATCCTCCTTGACCCCAACTTCAATGCC 2579
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2626 CCAGTTTTCCACCGAGACATCAAAGCCAGTAACATCCTCCTCGACCCCAACTTCAATGCC 2685
Query 2580 AAAGTTGCAGACTTTGGACTGTCTCGACTTGCTCCTGTTTTGGAGGACGAAGAGGATGTG 2639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2686 AAAGTTGCAGACTTTGGACTGTCTCGACTTGCTCCTGTTTTGGAGGACGAAGAGGATGTG 2745
Query 2640 CCTAAGTACGTCTCAACGGTTGTCCGTGGGACTCCAGGGTACCTGGATCCTGAATATTTC 2699
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2746 CCTAAGCACGTCTCAACCGTTGTCCGTGGGACTCCAGGGTACCTGGATCCTGAATATTTC 2805
Query 2700 CTGACACACAAGCTGACGGACAAGAGCGATGTTTACAGCATCGGAGTTGTGTTCTTGGAG 2759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2806 CTGACACACAAGCTGACGGACAAGAGCGATGTTTACAGCATCGGAGTTGTGTTCTTGGAG 2865
Query 2760 CTGCTGACTGGTATGCACGCCATATCCCATGGAAAAAATATAGTGCGAGAGGTGAAGACG 2819
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2866 CTGCTGACTGGTATGCACGCCATATCCCATGGAAAAAATATAGTACGAGAGGTGAAGACG 2925
Query 2820 GCGGATCAGAGGGATATGATGGTGTCGCTGATAGACAAGAGAATGGAGCCGTGGTCGATG 2879
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2926 GCTGAGCAGAGGGATATGATGGTATCGCTGATAGACAAGAGAATGGAGCCGTGGTCGATG 2985
Query 2880 GAAAGTGTTGAAAAGTTTGCGGCTTTGGCACTGAGATGTAGCCACGACTCACCGGAGATG 2939
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2986 GAAAGTGTTGAAAAGTTTGCGGCTTTGGCACTGAGGTGTAGCCACGACTCACCAGAGATG 3045
Query 2940 AGACCAGGAATGGCGGAGGTGGTGAAGGAGCTGGAAG-CACTGCTCCAAGCAGCCCCCGA 2998
|| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 3046 AGGCCAGGAATGGCGGAGGTGGTGAAGGAGCTGGA-GTCACTGCTCCAAGCATCCCCCGA 3104
Query 2999 TAAGGAGGCAAGAGTGGAAATGGCGTCGTCTTCGTCAGTGCTCTCAACATCGTCGTCGAA 3058
|| |||| ||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 3105 TAGGGAGACAAGAGTGGAATTGGCGTCATCTTCGTCAGTGCTGTCAACATCGTCGTCGAA 3164
Query 3059 TGTGACAAGAGACCTTTACGAGTCGTCGAGCCTTTTAGGAAGCGATCTCAGCAGCGGTTT 3118
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 3165 TGTGACAAGAGACCTTTACGAGTCGTCGAGCCTTCTAGGAAGCGATCTCAGCAGCGGCTT 3224
Query 3119 TGTTCCCAGCATCGCTCCTCGCTGACTTCAACCATT-CTACCTATACCCAAAAAACGTTC 3177
||||||||||||||||||||||||||| |||||||| | | |||| |||| | | |
Sbjct 3225 TGTTCCCAGCATCGCTCCTCGCTGACTCCAACCATTGC-ATCTATGTACAAAT--C-T-C 3279
Query 3178 TCT-CTT-T--TTTGACTCAACGTTTCTTACTTTTTAACCAATT 3217
| | | | | |||||||| || |||||||||||||||||||||
Sbjct 3280 TATACATATACTTTGACTCCACCTTTCTTACTTTTTAACCAATT 3323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161236554802
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5