BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486886
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01820.1 | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1 |... 2444 0.0
> AT5G01820.1 | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1
| serine/threonine protein kinase 1 | chr5:313193-315000 REVERSE
LENGTH=1808
Length=1808
Score = 2444 bits (1323), Expect = 0.0
Identities = 1613/1746 (92%), Gaps = 48/1746 (3%)
Strand=Plus/Plus
Query 1 ATCTCTTATCCGAATCCCAAtttgtctatctgtctctctctcttttgttttctctgttaa 60
||||||||||||||| || | | || ||||| |||||||||||||||||||| |||
Sbjct 1 ATCTCTTATCCGAAT-CC----TCCCAATTTGTCTGTCTCTCTTTTGTTTTCTCTGCTAA 55
Query 61 aagatctctaaaaaatatctgttacttttgttCATATC-TTTTACTTGTTCAAACTATTA 119
|||||||| |||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 56 CAGATCTCT-CTAAATATCTGTTACTTTTGTTCATATCTTTTTACTT-TTCAAACTACTA 113
Query 120 GTTTTTCCTTTCGCTTCTTCTATTAATATACAAACACTCTCTCTCTCAGA--------C- 170
|||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 114 -ATTTTCCTTTCGCTTCTTCTATTAATA-AC-AACACTCTCTCTCTCAGACTTCTTTTCT 170
Query 171 --TTTTTCTACGGCGTTGATTCATTCGCTATGTTTACGCTGAACTCATTTTCTGGGTACC 228
|||||||||||||||||||||||||| | | ||| |||| |||||| |||||
Sbjct 171 TTTTTTTCTACGGCGTTGATTCATTCGC-A-----A---TGACCTCAGTTTCTGTGTACC 221
Query 229 GTAATTGACCAAGGAGATTCTG-TTTTAATGGTAGATTCTGACACGGTGGAATTTCCGCC 287
||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 222 ATAATTGACCTAGCAGATTCTGTTTTTAATGGTAGATTCTGACCCGGTGGAATTTCCGCC 281
Query 288 GGAGAACCGCCGTGGACAGCTCTTCGGTAAATACGAGGTCGGCAAATTGGTGGGATGCGG 347
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 282 GGAGAACCGCCGTGGACAGCTCTTCGGCAAATACGAGGTCGGAAAATTGGTGGGATGCGG 341
Query 348 CGCCTTCGCTAAAGTGTACCACGGGAGGAACACAGCGACGGGTCAGAGCGTCGCGATCAA 407
||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 342 CGCCTTCGCGAAAGTGTACCACGGGAGGAGCACAGCGACGGGTCAGAGCGTTGCGATCAA 401
Query 408 AGTGGTGAGCAAGCAACGGCTGCAGAAAGGAGGCCTCAATGGCAACATTCAGAGGGAGAT 467
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 402 AGTGGTGAGCAAGCAACGGCTGCAGAAAGGAGGACTCAATGGCAACATTCAGAGAGAGAT 461
Query 468 CGCTATCATGCACCGTCTCCGCCACCCTTCTATCGTGCGCCTGTTCGAGGTCCTCGCCAC 527
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CGCTATCATGCACCGTCTGCGCCACCCTTCTATCGTGCGCCTGTTCGAGGTCCTCGCCAC 521
Query 528 CAAATCCAAGATCTTCTTCGTCATGGAATTCGCCAAAGGCGGTGAGCTCTTCGCCAAAGT 587
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 522 CAAATCCAAGATCTTCTTCGTCATGGAATTCGCCAAGGGCGGTGAGCTATTCGCCAAAGT 581
Query 588 CTCCAAGGGCAGGTTCTGCGAGGATCTCAGCCGTCGCTATTTCCAGCAGCTCATCTCCGC 647
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 582 CTCCAAGGGCAGGTTCTGCGAGGATCTTAGCCGTCGTTATTTCCAGCAGCTCATCTCCGC 641
Query 648 CGTCGGATACTGCCACTCCCGCGGCATCTTTCACCGTGACCTCAAACCTGAGAATCTCCT 707
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 642 CGTCGGATATTGCCACTCCCGCGGCATCTTTCACCGTGATCTCAAACCGGAGAATCTCCT 701
Query 708 CCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACTCAGCGCTCTTACCGATCA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CCTCGACGAGAAGCTCGATTTGAAGATCTCTGATTTCGGACTCAGCGCTCTTACCGATCA 761
Query 768 GATCCGACCCGACGGCCTCCTCCACACCCTCTGTGGTACGCCGGCATACGTGGCGCCGGA 827
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 762 GATCCGACCCGACGGCCTCCTCCACACACTCTGTGGTACGCCGGCGTACGTGGCGCCTGA 821
Query 828 GGTTCTGGCGAAGAAAGGCTACGACGGTGCTAAAATCGACATTTGGTCATGCGGAATCAT 887
|||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 822 GGTTTTGGCGAAGAAAGGGTACGACGGTGCTAAAATCGACATATGGTCATGTGGAATCAT 881
Query 888 ATTGTTTGTTCTCAACGCCGGTTATCTGCCTTTCAACGACCATAACCTCATGGTCATGTA 947
| |||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 882 ACTGTTCGTCCTCAACGCCGGTTATCTCCCTTTCAACGACCATAATCTCATGGTTATGTA 941
Query 948 CCGGAAAATCTACAAGGGAGAGTTTCGCATTCCCAAGTGGACCTCACCGGATCTCCGGCG 1007
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 942 CCGGAAAATCTACAAGGGAGAATTTCGCATTCCCAAGTGGACCTCACCGGATCTCCGGCG 1001
Query 1008 ACTTCTGACTCGGCTTCTCGACACGAATCCGCAGACGAGGATCACTATCGAAGAGATCAT 1067
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 ACTGCTGACTCGGCTTTTAGACACGAATCCGCAGACGAGGATCACTATCGAAGAGATCAT 1061
Query 1068 CCACGATCCATGGTTCAAACAGGGCTACGACGATCGGATGTCAAAATTCCACCTCGAGGA 1127
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1062 CCACGATCCATGGTTCAAACAGGGCTACGACGATCGGATGTCTAAATTCCATCTAGAGGA 1121
Query 1128 CTCCGATATGAAACTCCCGGCGGACGATATCGACGGCGAGATGGGAGCAAGGAGGATGAA 1187
||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1122 CTCCGATATGAAACTCCCGGCGGACGAGACCGACAGCGAGATGGGAGCAAGGAGGATGAA 1181
Query 1188 CGCATTCGACATCATCTCAGGATCCCCAGGATTCAATCTCTCCGGTCTGTTCGGCGACGC 1247
|||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 1182 CGCATTCGACATCATCTCAGGATCTCCAGGGTTCAATCTCTCCGGTCTTTTCGGAGACGC 1241
Query 1248 TAGAAAGTACGACCGAGTGGAACGGTTCGTGTCGGCGTGGACGGCGGAGAGGGTGGTGGA 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CAGAAAGTACGACCGAGTGGAACGGTTCGTGTCGGCGTGGACGGCGGAGAGGGTGGTGGA 1301
Query 1308 GAAGCTGGAAGAGATCGTGTCGGCGGAGAATCTGACGGTGGCGGCGAAGGAGGCGTGGGG 1367
|| |||||| ||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1302 GAGGCTGGAGGAGATCGTGTCGGCGGAGAATCTGACGGTGGCGAAGAAGGAAACATGGGG 1361
Query 1368 GATGAAGATTGAAGGGCAAAAAGGTAATTTCGCGATGGTGGTCGAGATAAACCAGCTAAC 1427
||||||||| || |||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1362 GATGAAGATCGAGGGGCAAAAAGGTAACTTCGCAATGGTGGTTGAGATAAACCAGCTAAC 1421
Query 1428 GGACGAGCTGGTTATGATAGAGGTGAGGAAGAGGCAAAGAGCCGCTGCATCTGGACGAGA 1487
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1422 GGACGAGCTGGTTATGATAGAGGTGAGGAAGAGACAAAGAGCCGCTGCATCTGGACGAGA 1481
Query 1488 TCTATGGACAGATACACTCAGGCCTTTCTTCGTCGAGCTTGTGCACGAACCAGACCAGAC 1547
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1482 TTTATGGACAGATACACTCAGGCCTTTCTTCGTCGAGCTTGTGCACGAATCAGACCAAAC 1541
Query 1548 GGACCCTCCTGAACCATCTCTAGTAAATACGACGTCGTAGTTTAGGTATCTGTCAAAATA 1607
|||||| |||||| ||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 1542 GGACCCA---GAACCAACTCAAGTACATACGACGTCGTAGTTTAGGTATCTGTCAAA-TA 1597
Query 1608 A-TTATCCCCATAATAATTaaaaaaaTATATATCCCGGGTTATCTGTAATTGtttttttt 1666
| |||||| |||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 1598 AATTATCCAAATAATAATTAAAAAAA-A-ATATCCCGGGTTATATGTAATTGCTTTTTTT 1655
Query 1667 ttttttttACCCGGAGAATATCTCTGACATAATTAATTATTCAGGAAATTTCTCGACAAA 1726
||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1656 TTT-----ACCCGGAGAATATCTCTGACATAATTA-TT---CAGGAAATTTCTCGACAAA 1706
Query 1727 TCTTAA 1732
||||||
Sbjct 1707 TCTTAA 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88302758655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5