BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486893
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01740.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 966 0.0
> AT5G01740.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein | chr5:280722-281445 FORWARD LENGTH=724
Length=724
Score = 966 bits (523), Expect = 0.0
Identities = 598/633 (94%), Gaps = 10/633 (2%)
Strand=Plus/Plus
Query 1 ACACTACACAAAAATAAGACCTTTCACTTCAAAACCTATCCTGTTCTAAGTCTGAAATA- 59
|||| ||||||| ||||||| |||||||| |||||||||||||||||||||||| || |
Sbjct 1 ACACAACACAAATATAAGACTTTTCACTTGAAAACCTATCCTGTTCTAAGTCTG-AAGAG 59
Query 60 ATAAATTTACAAATGGAAGCACACAACGTAGAGATATCGACAAGACTTACCCCAGAAATG 119
| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 AGAAATATACAAATGGAAGCACACAACGTAGAGATATCAACAAGACTTACCCCAGAAATG 119
Query 120 AAAAACCAGAGAACCATAGAGTTACTCTACAAAGCGTTGCAGCAAGGAGACACCTCGACG 179
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 120 AAAAACCAGGGAACCATAGAGTTACTCTACAAAGCGTTGCAGCAAGGCGACACTTCTACG 179
Query 180 GTGACCAAAGTGGTGGCCAGTGACGTGGAATGGTGGTTCCATGGACCGCACCATTGTCAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 GTGACCAAAGTGGTGGCCAGTGACGTGGAATGGTGGTTCCATGGACCGCACGATTGTCAA 239
Query 240 CACATGATGAGGCTACTAACAGGGGAACCACGGAGCCAGGTTTCGTTCAGGTTTGAGCCA 299
|||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 240 CACATGATGAGGCTGCTAACAGGGGAACCTCCGAGGCAGGTTTCGTTCAGGTTTGAGCCA 299
Query 300 AGCAGTGTACAAGTAGTGGTGCCTGGTCATGACTGCGTGATTGCAGAAGGGTGGGAGGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCAGTGTACAAGTAGTGGTGCCTGGTCATGACTGCGTGATTGCAGAAGGGTGGGAGGGT 359
Query 360 TCACACGTGTACTGGGTTCACGTGTGGAAGTTGAAAGACGGAGTGGTCACGGAGCTAAGA 419
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 360 TCACGCGTGTACTGGGTTCACGTGTGGAAATTGAAAGACGGAGTGGTCACTGAGCTAAGA 419
Query 420 GAGTATTTCAACACATGGCTCACTGTTACAGACTACAGTCTTGGAGCAATAGGATGGGAC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 GAGTATTTCAACACATGGCTCACTGTTACAGACTACAGTCTTGGAGCAGTAGGATGGGAC 479
Query 480 ATGGGGCGTTGTACGGTTTGGGAGAGCGTACCAAGGGACCTGGCTCGTGGATCGTTGCCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 ATGGGGCGTTGTACGGTTTGGGAGAGCGTACCAAGGGACCTGGCTCGTGGTTCGTTGCCT 539
Query 540 AGCTTGCTGTTAGCTATTTAAGTATATGACTAAAGAGTAAATTAA----GTAACACA--G 593
|||||| |||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 540 AGCTTGTTGTTAGCTATTTAACTA-ATGACTAAAGAGTAAATTAATTAAGTAACACACAG 598
Query 594 TTTGTGTCTGGTGGGTTTCTATACTTTTATGAT 626
||||| ||||| |||||||||||||||||||||
Sbjct 599 TTTGTCTCTGG-GGGTTTCTATACTTTTATGAT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31245639434
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5