BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486907

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01650.2 | Symbols:  | Tautomerase/MIF superfamily protein |...   564    3e-160


> AT5G01650.2 | Symbols:  | Tautomerase/MIF superfamily protein 
| chr5:242579-244111 REVERSE LENGTH=667
Length=667

 Score =  564 bits (305),  Expect = 3e-160
 Identities = 321/329 (98%), Gaps = 0/329 (0%)
 Strand=Plus/Plus

Query  1    GAAGAAGAAGAAGAAAATGCCGTGTCTCAACCTCTCCACCAACGTTAACCTTGACGGCGT  60
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  63   GAAGAAGAAGAAGAAAATGCCGTGCCTCAACCTCTCCACCAACGTTAACCTTGACGGCGT  122

Query  61   CGATACATCTTCCATTCTCTCGGAAGCTTCCTCCACCGTCGCCAAAATCATCGGCAAGCC  120
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  123  CGATACATCTTCCATTCTCTCGGAAGCTTCCTCCACCGTCGCGAAAATCATCGGCAAGCC  182

Query  121  TGAGAACTATGTGATGATTGTCTTGAAAGGCTCTGTGCCTATGTCATTTGGTGGGACCGA  180
            ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct  183  TGAGAACTATGTGATGATTGTCTTGAAAGGCTCAGTGCCTATGTCATTTGGCGGGACCGA  242

Query  181  GGATCCTGCAGCTTATGGTGAATTAGTCTCTATTGGTGGCCTTAATGCGGATGTGAACAA  240
            ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  243  GGATCCTGCAGCTTATGGTGAATTAGTTTCTATCGGTGGCCTTAATGCGGATGTGAACAA  302

Query  241  GAAGCTAAGCGCTGCTGTTTCCGCCATTCTGGAGACTAAGCTATCTGTGCCCAAGTCTCG  300
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  303  GAAGCTAAGCGCTGCTGTTTCCGCCATTCTTGAGACTAAGCTATCGGTGCCCAAGTCTCG  362

Query  301  ATTCTTCCTCAAGTTTTATGACACCAAGG  329
            |||||||||||||||||||||||||||||
Sbjct  363  ATTCTTCCTCAAGTTTTATGACACCAAGG  391


 Score =  303 bits (164),  Expect = 8e-82
 Identities = 183/192 (95%), Gaps = 2/192 (1%)
 Strand=Plus/Plus

Query  329  GGATCCTTCTTTGGTTGGAACGGGGCGACTCTTTAATTCCGTGG-ACTGTGATTAGTGTG  387
            |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||
Sbjct  477  GGATCCTTCTTTGGTTGGAACGGGGCGACTCTTTAATTCCGTGGTA-GGTGATTAGTGTG  535

Query  388  ATTGTTTTGAAATGTATGATCTACTCTCATCGATCAAGTAACTCTGAACTATTTCGTATT  447
            ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct  536  ATTGTCTTGAAATGTATGATCTACTCTCATCGATCAAGTAACTTTGAACTACTTCGTATT  595

Query  448  GTAAACATGTCTAAGGTTTGATGGAGTTGCATTAAGAAATAACATTTATGCTATATATGA  507
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  596  GTAAACATATCTAAGGTTTGATGGAGTTGCATTAAGAAATAACATTTATGCTATATATGA  655

Query  508  TTCTACGACTTA  519
            | |||| |||||
Sbjct  656  TGCTACAACTTA  667



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5