BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486922 Length=1094 Score E Sequences producing significant alignments: (Bits) Value AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photo... 1434 0.0 > AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photosystem II | chr5:208937-210445 FORWARD LENGTH=1222 Length=1222 Score = 1434 bits (776), Expect = 0.0 Identities = 1026/1137 (90%), Gaps = 56/1137 (5%) Strand=Plus/Plus Query 1 TGGATTTGTGTATCAATCCAACGGTCGTAATCGTCTTTCCAAGATA-GCTCAGCTCCAAA 59 |||||||||| ||| ||||||||||| ||||||||||||||||||| || ||||||| Sbjct 1 TGGATTTGTGAATCGATCCAACGGTCATAATCGTCTTTCCAAGATAGGC-CAGCTCC--- 56 Query 60 TGaaaaaaaaaTCCCCTCCACGCATCTATAATCGTGGATCAAGAAAC---T-GTGCAT-T 114 | ||| || |||||||||||||||||||||| |||||||||| | | | | | Sbjct 57 -G-----AAACTCACCTCCACGCATCTATAATCGTGTATCAAGAAACGGATCTTTCTTCT 110 Query 115 CT-TC-TC----TAT---------C--TT-GCCGGAGATGGCCGCCACTTCCGCCGCTGC 156 || || || ||| | || ||||||||||||||| || ||||||||||| Sbjct 111 CTATCTTCTGAATATCACAAAACCCAATTAGCCGGAGATGGCCGCAACATCCGCCGCTGC 170 Query 157 TGCAGCTGCTTCTTCCATCATGGGTACTCGGGTTGCTCCCGGTATCCATCCCGGTTCAAG 216 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 171 TGCAGCTGCTTCTTCCATCATGGGTACTCGGGTGGCTCCCGGTATCCATCCCGGTTCAGG 230 Query 217 TCGGTTCACGGCCCTGTTCAGTTTGGGAAAGAAGAAGGCAGCTCCCAAAAAGAGTGCGTC 276 ||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||| | | Sbjct 231 TCGGTTCACAGCCGTGTTCGGTTTCGGAAAGAAGAAGGCAGCTCCCAAAAAGAGT--G-C 287 Query 277 CAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGAATG 336 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 288 CAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGACTG 347 Query 337 GCTCGATGGTTCGTTGGTTGGAGATTACGGTTTTGATCCCTTTGGTTTGGGTAAACCGGC 396 ||| |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 348 GCTTGATGGTTCCTTGGTTGGAGATTACGGTTTTGATCCCTTCGGTTTAGGCAAACCGGC 407 Query 397 CGAGTATCTCCAGTTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGG 456 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 CGAGTATCTTCAATTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGG 467 Query 457 AGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTA 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 AGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTA 527 Query 517 CAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAGCTGATCCACGGACGGTGGGC 576 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 528 CAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAACTCATCCACGGACGGTGGGC 587 Query 577 GATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAGTGGCTCACCGGCGTTACTTGGCAAGA 636 ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| Sbjct 588 GATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAATGGCTTACCGGCGTTACATGGCAAGA 647 Query 637 CGCCGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCGTTCTC 696 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 648 CGCTGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCTTTCTC 707 Query 697 GATCTCGACATTGATATGGATCGAGGTGTTAGTGGTCGGCTACATCGAGTTCCAGCGCAA 756 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 708 GATCTCGACATTGATATGGATCGAGGTGTTAGTGATCGGCTACATCGAGTTCCAGCGCAA 767 Query 757 TGCTGAGCTTGACTCGGAGAAGCGTTTGTACCCGGGAGGCAAGTACTTCGACCCGCTAGG 816 || |||||||| |||||||||||||| ||||| |||||||||| ||| ||||||||||| Sbjct 768 CGCCGAGCTTGATTCGGAGAAGCGTTTATACCCCGGAGGCAAGTTCTTTGACCCGCTAGG 827 Query 817 TTTGGCGGCTGACCCGGAGAAGAAGGCTCAACTTCAATTAGCCGAGATCAAGCACGCACG 876 ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct 828 TTTAGCGGCTGACCCGGAGAAGACTGCTCAACTTCAGTTAGCTGAGATCAAGCATGCACG 887 Query 877 TCTTGCGATGGTCGCCTTCTTGGGATTTGCGGTTCAAGCGGCTGCAACGGGTAAAGGTCC 936 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 888 TCTTGCGATGGTCGCCTTCTTGGGATTCGCGGTTCAAGCGGCTGCAACAGGTAAAGGTCC 947 Query 937 ACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTT 996 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 ACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTT 1007 Query 997 CTCCTC--CT------C-TTA--A-G--A--TTCTATGTGTAACTTTTGTATAAACAGAG 1040 |||||| || | ||| | | | |||||| |||||||| |||| |||||||| Sbjct 1008 CTCCTCATCTTAAAATCATTATCATGTGAGATTCTATTTGTAACTTATGTAAAAACAGAG 1067 Query 1041 CTATGAT-A--CTGAATCGAGTTTGGGCTTTTGCTCGTTTGGTTTATCTACTTGTTT 1094 ||||||| | ||||||||| |||||||||||||| ||||||||||| ||| ||||| Sbjct 1068 CTATGATGATACTGAATCGACTTTGGGCTTTTGCTTGTTTGGTTTATTTACATGTTT 1124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53614182060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5