BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486924
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01520.1 | Symbols: | RING/U-box superfamily protein | chr5... 1703 0.0
> AT5G01520.1 | Symbols: | RING/U-box superfamily protein | chr5:206432-208611
FORWARD LENGTH=1306
Length=1306
Score = 1703 bits (922), Expect = 0.0
Identities = 1141/1242 (92%), Gaps = 34/1242 (3%)
Strand=Plus/Plus
Query 38 TTTTGATATTACGTGTGCTCTACGCGAATCTATCAATATCTAAA-----TC-ATCTC-CT 90
|||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 63 TTTTGATATTACGTGTGCTCTACGCGAATCTATCAATATCTAAATCCTCTCTTTCTCTCT 122
Query 91 -TCTCT-CTCC-TC--CTTCTTCTTCCTGTCGCTACCTTGTGGTTGAGTGAG-TAAATAT 144
||||| |||| || |||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 123 CTCTCTCCTCCTTCTTCTTCTTCTTCCTGTCGCTGCCTTGTGGTTGAGTGAGCAAAAAAA 182
Query 145 CTGGAAACCATCCATGGAAATGGGAGAGAGAATCAATTCTTGTTGTTGTTAGAGGGTTTG 204
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 183 CTCAAAACCCTCCATGGAAATGGGAGAGAGAATCAATTCGAGTTGTTGTTAGGGGGTTTG 242
Query 205 CGATATTTTAGGCTTCTGTCGGTGATCTCGA-C--AAAAATTAAACAAAGGAGCT-GCTA 260
||||||||||||||||||||||||||||||| | ||||| |||||||||||||| | ||
Sbjct 243 CGATATTTTAGGCTTCTGTCGGTGATCTCGACCAAAAAAAATAAACAAAGGAGCTAG-TA 301
Query 261 -GGTT-T-TTTCTCTCTCTCCCATTCGGAAGGAAGCTGGTTTATGTTGAATCGTCT-TTG 316
|||| | ||| ||||| | || |||||||||||||||||||||| || | | | ||
Sbjct 302 GGGTTCTGTTT-TCTCTAT--CACTCGGAAGGAAGCTGGTTTATGTCAAAAC-TTTGTTC 357
Query 317 TTCGGAAAATGCGAAAATCGTTTAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGT 376
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 358 TTCGGAAAATGCGAAAATCGTTCAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGT 417
Query 377 TCGCCAACACTCTGGCATCAGAGTATCCAGAGGAGTATGATGGTGGCTACGTTCAGATGA 436
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 TCGCCAACACTCTGGCGTCAGAGTACCCAGAGGAGTATGATGGTGGCTACGTTCAGATGA 477
Query 437 GATTATCTTACAGCCCCGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTC 496
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATTATCTTACAGCCCGGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTC 537
Query 497 ATTTCGCTGGCACTTTGGGATTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGA 556
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATTTCGCTGGCGCTTTGGGCTTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGA 597
Query 557 AGACCACAATGTCGCTACATGAACGCAAAGCTAGTATCAGAGACTTCTATGATGTGTTGT 616
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 598 AGACCACAATGTCGCTACATGAACGCAAAACTAGTATCAGAGAATTCTATGATGTGTTGT 657
Query 617 TTCCTTCGCTATTGCAACTTCACGGAGGGATAACCGATCTAGAAGAAAGGAAGCAGAAGG 676
|||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 658 TTCCTTCGCTATTGCAACTTCATGGAGGGATCACCGATGTAGAAGAAAGGAAACAGAAGG 717
Query 677 AGATATGCGACAAACGATACCGGAAAAAGGACAGAACAGAGAAAGGAAAGATGTCGGAGA 736
|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 718 AGATATGCGACAAAAGATACCGTAAAAAGGACAGAACAGATAAAGGAAAGATGTCGGAGA 777
Query 737 TCGATTTGGAGAGGGAAGAAGAGTGTGGAATTTGCTTGGAGATTCAAAATAAAGTTGTTC 796
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 778 TCGATTTGGAGAGGGAAGAAGAGTGTGGAATCTGCTTGGAGATTCGAAACAAAGTTGTTC 837
Query 797 TCCCTACTTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCAAGGTCAC 856
| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 TTCCTACGTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCACGGTCAC 897
Query 857 AGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTGTGGATAT 916
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 898 AGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTATGGATAT 957
Query 917 ACACTTCTAGCGCCGAGATTGCAGATTTACCGGCGATTTACAAGGACAATCTGAAGAGGT 976
|||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 958 ACACTTGTAGCGCCGAGATTGCAGATTTACCAGCGATTTACAAGGAGAATCTGAAGAGGT 1017
Query 977 TGTTGATATACATTGACAAGTTGCCTCTCGTTACTTGTGATCCAAATCTAGTCCCTTATG 1036
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1018 TGTTGATATACATTGACAAGTTGCCTCTCGTTACTTCTGATCCAAATCTTGTCCCTTATG 1077
Query 1037 CTCCTCTTCCTCGGTGAACGAACACATTCTCTTTATTTCTTGTTATGCACATAGCAATTT 1096
||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||
Sbjct 1078 CTCCTCTTCCTCGGTGAAC-ATTACATTCTCTCTGTTTCTTGTTATGCACATAGCAATTT 1136
Query 1097 CTATCAAA-A--TTTCATCTATTTGTGTCCACTTTGTATATAATATTTATGTGTTTCCAG 1153
|| ||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1137 CTTTCAAACAAATTTCATCTATTTATGTCCACTTTGTATATAATATTTATGTGTTTTTAG 1196
Query 1154 CCC-TTGTGCTTCTAGT-TAATCGTCTCTGATTTGGGTTTGTATATAACAACCGTTGGTT 1211
|| | | ||| | || | ||||| |||||||||||||||||||||||| ||||||
Sbjct 1197 TTGGTTTTTCATCTT-TCTA-TAGTCTCAGATTTGGGTTTGTATATAACAACCATTGGTT 1254
Query 1212 ATTGACATTTAGATCCAAAATTCGATATCACATTTGCTTATT 1253
||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 1255 ATTGACATTTAGATCAAAAATTCGATATCATATTTGCTGATT 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61596068715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5