BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486949
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01260.2 | Symbols: | Carbohydrate-binding-like fold | chr5... 1816 0.0
> AT5G01260.2 | Symbols: | Carbohydrate-binding-like fold | chr5:105325-107405
FORWARD LENGTH=1560
Length=1560
Score = 1816 bits (983), Expect = 0.0
Identities = 1164/1250 (93%), Gaps = 17/1250 (1%)
Strand=Plus/Plus
Query 1 AAACCAAAAACTCTTCTTCTTCTTCTGATGATGAAGATGATTGGCATTGGAGGAACCCTA 60
|||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 12 AAACCAAAAA--C-TCTTCTTCTTCTGATGA--AAGATGATTGGCATTGGAAGAACCCTA 66
Query 61 ACTTCTTCTTCTCCATCTAAGATCATTCTCGAAGATTTTCCTCCTGGAATTTCTCGCTAT 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 67 ACTTCTTCTTCTCCATCTAAGATCATTCTCGAAGATCTTCCTCCTGGAATTTATCGCTAT 126
Query 121 GGAACAGAGAT-TCTCCCATGTGTTACCAGGAAAACGTTTCATCACATCAAGTTTTTGCG 179
||||||||||| | || | | ||| ||||||||||||| ||||||||||||||||||||
Sbjct 127 GGAACAGAGATAT-TCACTTCCGTTCCCAGGAAAACGTTCCATCACATCAAGTTTTTGCG 185
Query 180 TTTAGATTCTGCTCACAGCAGCAGGATTCTTAAGCCAATTCCGCTTCGTTCTTCGTCGAT 239
||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 186 TTTGGATTCTGCTCAGAGCAGCAGGATTCTTAAGCCGGTCCCGCTTCGTTCTTCGTCGAT 245
Query 240 TAAGGATTCTCAGGTAAACGTAGAAGCTGCAGAAATCGAAGC-TCATAGA-AAAACGGTT 297
||||||||| |||||||||||||||| || |||||||||||| || || | ||||| |||
Sbjct 246 TAAGGATTCGCAGGTAAACGTAGAAGATGAAGAAATCGAAGCTTC-TA-ACAAAACAGTT 303
Query 298 CGTGTAAGGTTCCAGTTGCGGAAAGAGTGTGTCTTTGGGGAACATTTTTTCATTCTTGGT 357
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 304 CGTGTAAGGTTCCAGTTGCGGAAAGAATGTGTCTTTGGGGAACATTTTTTCATTGTTGGT 363
Query 358 GATGATCCTTTGTTTGGTGGCCTTTGGGATCCAGAAACTGCTTTACCACTGAACTGGTCT 417
||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 GATGATCCTGTGTTCGGTGGCCTTTGGGATCCAGAAACTGCCTTACCACTGAACTGGTCT 423
Query 418 GATGGCAATGTTTGGACTGTAGATTTGGATTTGCCTGTTGGAAGATTGGTCGAATTCAAG 477
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 424 GATGGCAATGTTTGGACTGTAGATTTGGATTTGCCTGTTGGAAGATTGGTTGAATTTAAG 483
Query 478 -TTTATACTAAAGGCACAGACAGGGGAGATTTTGTGGCAACCAGGTCCGAACCGGGCTCT 536
||| || | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 484 CTTT-TATTGAAGGCACAGACAGGGGAGATTTTGTGGCAACCAGGTCCAAACCGGGCTCT 542
Query 537 TGAAACTTGGGAAACTAACAAAACTATCAGAATATGTGAAGACTGGGATAATGCTGATCT 596
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGAAACCTGGGAAACTAACAAAACTATCAGAATATGTGAAGACTGGGATAATGCTGATCT 602
Query 597 TCAAATGATGATTGAGGAAGATTTTGTGCCTTACACCAATGTTTCATCAAACAGTGAAGA 656
|||||||||||||||||||||||||||||||||||||||| |||| || | | || |||
Sbjct 603 TCAAATGATGATTGAGGAAGATTTTGTGCCTTACACCAATATTTCGTCGATCGGTTCAGA 662
Query 657 AGAAGAGGATGAAGTGCTTGTTACTGCACAACAAAAAGCTTCAGTAGTAGTTGTAGAGAA 716
||| |||||||||||||||| || || ||||||||| |||||||||||| |||||||||
Sbjct 663 AGATGAGGATGAAGTGCTTGGTAGTGTACAACAAAACTCTTCAGTAGTAGCTGTAGAGAA 722
Query 717 TGCAGGATATGTAAGTGATGAGTCTGCGGAAAATTCGAGTTTC-GATATCCAAAGTGAGA 775
||||||||| || |||||||||||||| | |||||||||||| | ||||||||||||||
Sbjct 723 TGCAGGATACGTGAGTGATGAGTCTGCCCAGAATTCGAGTTTCAG-TATCCAAAGTGAGA 781
Query 776 AAACTATGGAACCTTCTAATGGAGCTTTGACTGCTCGGGAGGTGACCAAAGAAGCCATGT 835
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 AAACTATGGAACCTTCGAATGGAGCTTTGACTGCTCGGGAGGTGATCAAAGAAGCCATGT 841
Query 836 TTACTGAGGAAGAAAGTCCAGTTTTGGTTCCTGGATTGATTCCTCTGTCTGACTTGGATA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 TTACTGAGGAAGAAAGTCCAGTTTTGGTTCCTGGATTGATTCCTCTGTCTGACTTGGATA 901
Query 896 ATGAAGAAGTGGCTGTTATTAACGAAGGTAAAGCAGAAACGTTCCCGGAGGTAGATaaga 955
||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 902 ATGAACAAGTGGAAGTTATTAATGAAGGTAAAGCAGAAACGTTCCCGGAGGTAGATAAGA 961
Query 956 agccagaaaccaaagcagaaagaaacaagaaagcaaaagtaaaagcGATTTCGTTATTCG 1015
||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 AGCAAGAACCCAAAGCAGAAAGAAACAAGAAAGCAAAAGTAAAAGCGATTTCATTATTCG 1021
Query 1016 AGAAACCGGAACAAGAAGCAGTGAAAAGTGTAGAACAGAGGCAGTACAATAG-AGTAGAG 1074
||||| |||| ||||||||||||||||||||||| |||||||| |||||| | |||||||
Sbjct 1022 AGAAATCGGAGCAAGAAGCAGTGAAAAGTGTAGAGCAGAGGCAATACAAT-GCAGTAGAG 1080
Query 1075 GAAGAGCAGCAGCGGCTAGAGACAGAGCCGCTTGGAACACCGGAAGTGCTTTTAGAGAAT 1134
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 1081 GAAGAGCAGCAGCGGCTAGAGACAGAGCCGCTTGGAACGCCGGATGTGCTTTTTGAGAAT 1140
Query 1135 GATATCCAGTGGGGACGCAGAACGCTTTACAAGCTTCTAAGCAACTTTGGACTTTTCTAA 1194
|||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1141 GATATCCAATGGGGACGCAGAACACTTTACAAGCTTCTAAGCAACTTTAGACTTTTCTAA 1200
Query 1195 ACTCGACTAAGTTTCGAGTGCATACATACATCAGCAAAAGAGCCTCAAGA 1244
|||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1201 ACTCGACTAAGTTTTGAGTGCATACATACATCGGCAAAAGAGCCTCAAGA 1250
Score = 252 bits (136), Expect = 8e-66
Identities = 160/172 (93%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 1303 TGTTGTGTTGTCTTTGTAGATATGTAATGATCAAATGGTTTTGGTAAAGAGAGAGATGAA 1362
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1370 TGTTGTGTTGTCTTTGTATATATGTAATGATCAAATGGTTTTGGTAAAGAGAAAGATGAA 1429
Query 1363 GAAAGAAAGGAGTGTTAGTGTTAATTGTTAAGTACATAGGACAGTATGTATCATGTGGAT 1422
||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 1430 GAAAGAATGGACTGTTAGTGTTAGCTGTTAAGTACATAGGACAGTATGTAGCATCTGGAT 1489
Query 1423 CCAATTCTCCCAAATAATTGTATTGTTGTTACATAatgatgatgatgatgat 1474
|| ||||||||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 1490 CCTATTCTCCCATATAATTGTATTGTTGCTACATAATAATGATGATGATGAT 1541
Score = 87.9 bits (47), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1244 AAAAACTGCTCTTAAAAGGTAGGCTACCTTCTTCTTCTCTGCTCACCTTTATGTTATGT 1302
|||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||
Sbjct 1279 AAAAACTGCTCTTAAAAGGTAGGCTACCTTCTTCTTCTATGCTCATCTTTACGTTTTGT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5