BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487044
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02710.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1437 0.0
AT5G02720.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 313 3e-84
> AT5G02710.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised
protein family UPF0153 (InterPro:IPR005358); Has 240 Blast
hits to 240 proteins in 73 species: Archae - 10; Bacteria -
110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 95 (source: NCBI BLink). | chr5:612570-614499
FORWARD LENGTH=1025
Length=1025
Score = 1437 bits (778), Expect = 0.0
Identities = 951/1031 (92%), Gaps = 25/1031 (2%)
Strand=Plus/Plus
Query 1 TAATCTTATCTTGAGAACATTTCTTGC-T-TCTAATTTGCGCC--aa-aaaaaTGGTTAT 55
|||||||||||||| |||||||||||| | ||||||||||||| || |||||||| |||
Sbjct 7 TAATCTTATCTTGACAACATTTCTTGCTTCTCTAATTTGCGCCAAAAGAAAAATGGATAT 66
Query 56 TTCGCTTGCGTTATCGACGGCACCAATGAGCACGACGATTATCTCTGCTACGAGGCGGTC 115
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 67 GTCGCTTGCGTTATCGACGGCACCAATGAGTAGGACGATTATCTCTGCCACGAGGCGGTC 126
Query 116 CCAAGTTTCACAACCTAAAGCTAAGAAAGTCAAGCCGGAGAATAAGCGGCCAACGACGAC 175
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 127 CCAAGTTTCACAACCTAAAGCTAAGAAAGTCAAGCCGGCGAATAAGCGGCC-A--ACGAT 183
Query 176 GTCGACGAGCGGTTTTTCCGGCAGAACAACGAAGGAATTGACTTGGAAGTGCGTCGAAGG 235
|||||| |||||||| |||||| |||| || ||||| ||||||||||||||||| |||||
Sbjct 184 GTCGACAAGCGGTTTCTCCGGCGGAACGACAAAGGAGTTGACTTGGAAGTGCGTAGAAGG 243
Query 236 TTGTGGAGCTTGCTGTAAGATTGCAAAGGAC--TTCGCTTTCGCAACACCTGACGAAATC 293
||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 244 TTGTGGAGCTTGCTGTAAGATTGCAAAGGACTTTTC-CTTT-GCAACACCTGACGAAATC 301
Query 294 TTCGACAACCCTGATGATGTGGAGCTGTATCGAAGCATGATTGGAGATGATGGATGGTG- 352
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 302 TTCGACAACCCTGATGATGTTGAGCTGTATCGAAGCATGATCGGAGATGATGGATGGTGT 361
Query 353 CATAAACTACAACAAATCTACACGCAAATGCTCGATTTATTCTGATCGTCCATACTTTTG 412
| |||||||| ||||| |||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 362 C-TAAACTACGACAAAGCTACACGCAAATGCTCTATTTATGCTGATCGTCCATATTTTTG 420
Query 413 TCGTGTTGAGCCCGAGGTTTTCAAGTCACTCTACGGGATTGAAGAAAAGAAATTCAACAA 472
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCGGGTTGAGCCAGAGGTTTTCAAGTCACTCTACGGGATTGAAGAAAAGAAATTCAACAA 480
Query 473 GGAAGCTGTCAGCTGCTGCATTGACACCATTAAGACGATATATGGCCCTGATTCCAAAGA 532
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 481 GGAAGCTGTCAGCTGCTGCATTGACACAATTAAGACGATATACGGCCCTGATTCCAAAGA 540
Query 533 ATTGGATAACTTCAACCGTGCCATAAGAAGTAGTCCGAGCTCGAGTTGA-TAGTCAGATA 591
|||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 541 ATTGGATAGCTTCAACCGTGCCATCAGAAGTAATCCGAGCTCGAGTTGATTAGTCAGATA 600
Query 592 AACTCAAAGGCAGGAAACACAAATGCGGGAATTAGTTTTTACTCACCGGAGTCGAGCTTG 651
|||||||||| |||||||| |||| || |||||||| |||||||||||||| || ||||
Sbjct 601 AACTCAAAGGAAGGAAACAGAAATAAGGAAATTAGTTATTACTCACCGGAGTGGAACTTG 660
Query 652 GCGCAACCGTGGCAGACAAAAGTAGCGTTAATCTCTTTTTCTTTAAAATGCATATAGACT 711
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 661 GCGCAACCGTGGCAGACAAAAGTAGCATTAATCTCCTTTTCTTTAAAATGCATATAAACT 720
Query 712 TGGCTAGCAGAGAAATCAGTGGGACAAACTTCCCATACATCGAACTCTTTGTCTGAAACG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGGCTAGCAGAGAAATCAGTGGGACAAACTTCCCATACATCGAACTCTTTGTCTGAAACG 780
Query 772 AGGCTGCCTTGCTCATAGATTCCGCATCGCTTACACTTTTCGCCACCGATTTCAGTCATA 831
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 781 AGGCTGCCTTGCTCATAGATTCCGCATCGTTTACACTTTTCGCCACCAATTCCAGTCATA 840
Query 832 GGCTGTA-CGTAG-CGATAGAGTGAAGAAACATATATGTATTTAAACAATCTTATTAATA 889
||||||| | || | ||||||||||||| |||||||||||||| || | |||||||||
Sbjct 841 GGCTGTAAC--AGGCAATAGAGTGAAGAA-CATATATGTATTTATCCA-TGTTATTAATA 896
Query 890 GAGTGTAGTAATAGAT-GGTTGTAAAAGAGAATTGGGACGAGCCTGCCATGATTCTTGAC 948
|| ||||||||| || || ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 897 GATTGTAGTAAT-GAACGGATGTAAAAGAGATTTGGGACTAGCCTGCCATGATTCTTGAC 955
Query 949 CGCGGAAAGTATACAAGACACCGGTTTTGGTAACATCTGGAAGAACAGTTTTGTTCTCTC 1008
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 956 CGCGGAAAGTGTACAAGACACCTGTTTTGGTAACGTCTGGAAGAACAGTTTTGTTCTCTC 1015
Query 1009 CTAT-GCATTG 1018
| || ||||||
Sbjct 1016 C-ATTGCATTG 1025
> AT5G02720.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G53490.1);
Has 47 Blast hits to 47 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:613782-614313
REVERSE LENGTH=417
Length=417
Score = 313 bits (169), Expect = 3e-84
Identities = 185/193 (96%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 638 CGGAGTCGAGCTTGGCGCAACCGTGGCAGACAAAAGTAGCGTTAATCTCTTTTTCTTTAA 697
|||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 193 CGGAGTGGAACTTGGCGCAACCGTGGCAGACAAAAGTAGCATTAATCTCCTTTTCTTTAA 134
Query 698 AATGCATATAGACTTGGCTAGCAGAGAAATCAGTGGGACAAACTTCCCATACATCGAACT 757
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AATGCATATAAACTTGGCTAGCAGAGAAATCAGTGGGACAAACTTCCCATACATCGAACT 74
Query 758 CTTTGTCTGAAACGAGGCTGCCTTGCTCATAGATTCCGCATCGCTTACACTTTTCGCCAC 817
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 73 CTTTGTCTGAAACGAGGCTGCCTTGCTCATAGATTCCGCATCGTTTACACTTTTCGCCAC 14
Query 818 CGATTTCAGTCAT 830
| ||| |||||||
Sbjct 13 CAATTCCAGTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5