BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487063 Length=1556 Score E Sequences producing significant alignments: (Bits) Value AT5G02850.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2307 0.0 > AT5G02850.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:652110-653673 FORWARD LENGTH=1564 Length=1564 Score = 2307 bits (1249), Expect = 0.0 Identities = 1475/1578 (93%), Gaps = 40/1578 (3%) Strand=Plus/Plus Query 1 TCTCTTAAATTACCTTGGATTTAAGAGATTCCTTCGCCGTCGGCGAAGATGCTACAGCAT 60 |||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 2 TCTCTTTAATTATCTTCGATTTAAGAGATTCTTTCGCCGTCGGCGAAGATGCTACAGCAT 61 Query 61 CAGATCGTACAATCTCCGGCGAGATTAGGGCTAACAGGTCCTGGTTCTCCCTCCGTACAA 120 |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| Sbjct 62 CAGATCGTACAATCTCCGGCGAGATTAGGGTTAACAGGTCCTGGCTCTCCTTCCGTACAA 121 Query 121 AATCCAACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCAC 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 AATCCGACGCCTACTCGTCATGGCCATCCAACCTCTTCTTCATCTTCCCAATCTCAGCAC 181 Query 181 CAACAGATCCAACAACAACCTAATCTACTCCCTTCCTCCACCGTCGCCGCCGCTTCCTCA 240 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 182 CAACAGATCCAACAACAGCCTAATCTACTTCCTTCCTCCACCGTCGCCGCCGCTTCCTCA 241 Query 241 GCCTCAGCTGCATCGGCTATTTCATCCTCCGCTTTGCTATCTCTCCTTCCGCCATTACCG 300 ||||||||| | ||||| ||||||||||||| |||||||| |||||||| ||||||||| Sbjct 242 GCCTCAGCTTCGGCGGCTGTTTCATCCTCCGCCTTGCTATCGCTCCTTCCTCCATTACCG 301 Query 301 CGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACGTCTAAGCTCTTCGACGTCTCT 360 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 302 CGAGCTCAAGCTCTTCTCCAGCAGATGGCGGTTTTGACATCTAAGCTCTTCGACGTCTCT 361 Query 361 CCCAATCGAGCTCTCTGGCTCTCAGCTTTTCGTGGCTCTCTCCCTTCGTTCCTCTCCTCA 420 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 362 CCCAATCGAGCTATCTGGCTCTCAGCTTTCCGTGGCTCTCTCCCTTCGTTCCTCTCCTCA 421 Query 421 CACTCGTTACCACCGCCTCCGCCGCTTGAAAACCCTAATCCTTCATCCACGAAGGAGATC 480 |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| Sbjct 422 CACTCGTTACCACCTCCGCCGCCGCTTGAAAACCCTAGTCCTTCATCCACGAAGGAGATC 481 Query 481 CTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTAACTGAGCTTCAAGAG 540 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 482 CTCTCTCAATTCAATTCCCTCCAGACTCAGCTCTTCGAAGCCGTTACAGAGCTTCAAGAG 541 Query 541 ATCCTCGATCTGCAAGACGCGAAGCAAAAGGTCGCGCGTGAGATCAAATCCAGAGATTCA 600 |||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| Sbjct 542 ATCCTCGATCTGCAAGACGCGAAGCAGAAGGTGGCGCGTGAGATCAAATCCAAAGATTCA 601 Query 601 TCTCTTCTCGCGTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTT 660 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 TCTCTTCTCGCTTTCGCTAACAAACTCAAGGATGCAGAACGTGTTCTCGATATGCTTGTT 661 Query 661 GACGACTACTCCGACTATCGCAAACCAAAACGAAGCAAAATTGTGAGTGAAGAAGAAGAA 720 |||||||||||||| || |||||||||||||||||||||| | ||| ||||| || ||| Sbjct 662 GACGACTACTCCGATTACCGCAAACCAAAACGAAGCAAAA-T-TGA-AGAAGATGACGAA 718 Query 721 GACAATGATAATGAGTCTTCTTCTTCTTCGACCACAGTTTCGTCTCAGCTCAAACTAAAG 780 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 719 GACAATGATAATGAGTCTTCTTCTTCTTCAACCACAGTTTCGTCTCAGCTCAAGTTAAAG 778 Query 781 GACATTTTAGCTTACGCTCATAAGATCAGCTACACCACATTTGCTCCACCGGAATTTGGT 840 ||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||| ||| Sbjct 779 GACATATTAGCTTACGCTCACAAGATTAGCTACACCACATTTGCTCCGCCGGAATTCGGT 838 Query 841 GCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GCAGGGCAAGCACCTCTCCGTGGTGCATTACCACCAGCTCCACAAGACGAACAAATGAGA 898 Query 901 GCTTCTCAGCTCTATGCTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAAC 960 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GCTTCCCAGCTCTACACTTTCGCTGATCTTGATATCGGTCTGCCGAAAACAGTAGAAAAC 958 Query 961 ATGGAGAAGAAGGTTGAAGCACTCATTGAGccaccaccaccaccaccaGAAGCTATGGAT 1020 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 959 ATGGAGAAGAAGGTTGAAGCACTGATTGAG---CCACCACCACCACCAGAAGCTATGGAT 1015 Query 1021 ATCTCTGCAATTCATAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCA 1080 || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 ATATCTGCTATTCACAACCTGCTTCCGCCGAATATCGCAGTTCCTTCAGGATGGAAACCA 1075 Query 1081 GGAATGCCGGTCGAATTACCAAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGT 1140 |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1076 GGAATGCCAGTCGAATTGCCTAGAGATTTACCATTGCCACCTCCTGGATGGAAACCAGGC 1135 Query 1141 GACCCAGTTGTGTTACCGCCATTGGAGTCAATTGCTGCACCTAGAGCGGAGGATCAGCAA 1200 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| Sbjct 1136 GACCCAGTTGTGTTACCGCCACTGGAGTCAATTGCTGCACCTAGAGCAGAGGATCATCAA 1195 Query 1201 CATATGCGACCTCCTCAGGGACTTCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTT 1260 |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1196 CATATGAGACCTTCTCAGGGACTCCACAGACCGCCTGATGTCATACAGGTCCGAGCTGTT 1255 Query 1261 CAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCA 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 CAACTTGACATTTTGGAGGATGATGATAGCAGTGATTACAGCAGCGATGATGCAAGCTCA 1315 Query 1321 GATGACGAGGATTAATCAACATTGT-A---AT--T-----G-A---T---G-TT-GACCA 1360 ||||| ||||||||||||||||||| | || | | | | | || ||||| Sbjct 1316 GATGATGAGGATTAATCAACATTGTGATTGATGGTTCTCTGTAAGGTAATGATTTGACCA 1375 Query 1361 ATGTTACTGCTAATTCTTGATCAAGTTTGAGTGAAATTTTCTACTTGGTTTCGTTTTGTT 1420 |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| Sbjct 1376 ATGTTACTGCTAATTCTTGATCAAGTTTGA-T----TTT-CTACTTGGTTTCGTTTTGTT 1429 Query 1421 TTAGCAGTGTCTTTATGTGGATAGATGTTAAGTAGTATATGCTTCATCGTTATCAGTATC 1480 | ||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||| Sbjct 1430 T-AGCAGTGCCTTTATGTGGATAGATGTTA-GTA-TAT--GCTTCATCGTTATCAGTATC 1484 Query 1481 TTTGATGTATCAA-GATTGTTTCTTACGAAA-CCCTGGATTCTAATTCAGTTTACAGAGT 1538 ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1485 TTTGATGTATCAAAG-TTGTTTCTTACGAAAACCCTGGATTCTAATTCAGTTTACAGAAT 1543 Query 1539 TATTGGTCATCTTTTTTC 1556 ||||||| |||||||||| Sbjct 1544 TATTGGTTATCTTTTTTC 1561 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76806833850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5