BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487092
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03200.1 | Symbols: | RING/U-box superfamily protein | chr5... 1615 0.0
> AT5G03200.1 | Symbols: | RING/U-box superfamily protein | chr5:760319-761803
REVERSE LENGTH=1281
Length=1281
Score = 1615 bits (874), Expect = 0.0
Identities = 1096/1200 (91%), Gaps = 27/1200 (2%)
Strand=Plus/Plus
Query 25 TATCAACTGAATCA-CGAAAAACCTCACCTTTTTTCTTTTCCCGATCATGGGGAATCTGA 83
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 90 TATCAACTGAATCACCGAAAAACCTCACCTTTTTTCTTTTTCCGATCATGGGGAATCTGA 149
Query 84 TCAGTCTGATCTTCTGCTGCGGGAGAAGGCGGAGGAGCAATATTCCTCCGGCGATGGAAA 143
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 150 TCAGTTTGATCTTCTGCTGCGGGAGAAGGCAGAGGAGCAATATTCCTCCGGCGATGGAAA 209
Query 144 CGGCTCCTCTTGAACTCCCAGCGAATAGATTTGTATTCGCCGCGGCACCGCCGTATCTGA 203
|||||||||||||||||||| |||| ||||||||||||||||| | || || |||||||
Sbjct 210 CGGCTCCTCTTGAACTCCCACCGAACAGATTTGTATTCGCCGCCGTGCCACCATATCTGA 269
Query 204 ACCCTAACCCTAACTACTTTGATCAGTATCCAGGTTACTGCCTTCCTCCGCC-G---CT- 258
||||||||||||||||| |||| |||||||||||| |||||||||||||||| | ||
Sbjct 270 ACCCTAACCCTAACTACGTTGACCAGTATCCAGGTAACTGCCTTCCTCCGCCAGTAACTG 329
Query 259 -GCCGCAGCCGCTGCCTTACAGTCTCCACCACTTACATCAATATCCTCCCCACAGTTACC 317
||||| | ||| || |||| | || |||| || ||||| ||||||||| |||||||||
Sbjct 330 AGCCGCCGATGCTACCGTACAATTTCAACCATTTGCATCACTATCCTCCCAACAGTTACC 389
Query 318 AACTACCTCATCCTTTGATTCCCGGCGGTAGACACCCGATGCTACCGCCT-C--CGTACG 374
||||||||||||||||| ||| |||||||||| |||| || || |||||| | ||||||
Sbjct 390 AACTACCTCATCCTTTGTTTCACGGCGGTAGATACCCTATACTGCCGCCTCCTACGTACG 449
Query 375 TCCATGAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAAGGAGACTTTAAGGC 434
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 450 TCCACCAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAAGAAGACTTTAACGC 509
Query 435 TCATACCCGACCCGGAGAATCCGAATCGACTTCTTGTCTCCTTCACATTTGATGCAGCCA 494
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 510 TCATACCCGACCCGGAGAATCCGAATCGACTTCTTGTCTCCTTCACATTTGATGCATCCA 569
Query 495 TGCCCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGAAGAAGAAGGCAATCTTAGAG 554
|||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 570 TGCCCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGATGCAGAATGTAATCTTAGAG 629
Query 555 CAACAAAGGAAGATACTTTGCCTCCAATCACTTTTGATTTCGGAAAAGGACTTGGTCAGA 614
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 630 CTACAAAGGAAGATACTTTGCCTCCAATCACTTTTGATTTCGGAGAAGGACTTGGTCAGA 689
Query 615 AGTTCATACAACCATCTGGAACGGGTATTGACCTGACGGCATTTGCAGATTCCGAGCTAT 674
||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||||
Sbjct 690 AGTTCATACAATCATCTGGAACGGGTATAGACTTGACGGCGTTTAAAGATTCCGAGCTAT 749
Query 675 TCAAGGGGGTGGATACAGATGTCTTCCCGTTGGCGATTAAGGCGGAGGCAACTCCAGCGG 734
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 750 TCAAGGAGGTGGATACAGATGTCTTCCCGTTGGCGGTTAAGGCGGAGGCAACTCCAGCGG 809
Query 735 AAGAAGGAAAGTCGGGTTCCATGAATGGGCAGATTACTCAAGTGGTGTATACCAAGGAGA 794
||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 810 AAGAAGGAAAGTCTGGTTCCACCAATGTGCAGATTACTCAAGTGGTGTATACCAAGGAGA 869
Query 795 AAGGAGAGATTAAGATAGAAGTGGTGAAGCAGATACTATGGGTGAATAGGATGAGATATG 854
||||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 870 AAGGAGAGATTAAAATAGAAGTGGTGAAGCAGATACTATGGGTGAATAAGAGGAGGTATG 929
Query 855 AGTTGCGGGAGATTTATGGGATTGAGAACACGGTTGATGGTTGCGACGAGGGAAAGGAAT 914
|| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 930 AGCTGCTTGAGATTTATGGGATTGAGAACACGGTTGATGGTTCCGATGAGGGAAAGGAAT 989
Query 915 GTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTA 1049
Query 975 TGTGCAGCGGGTGCGCAAAAGCGTTAAGGTTTCAGACACATCTGTGTCCAGTTTGCAGAC 1034
|||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 1050 TGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGCCCAGTTTGCAGAC 1109
Query 1035 AACCTGTAGAGAGGCTTTTGGAGATTA-CGGTAGACGGAAACAAGAAAGGTGGAAATGGA 1093
||||||| |||| |||||||||||||| | | | | || | || || |||||||
Sbjct 1110 AACCTGTTGAGATGCTTTTGGAGATTAAC---A-A-G-AA-CG-GA----TG-AAATGGA 1156
Query 1094 GATGGAGATT-AACAAATTTAGTTAAGCAATAGACTTGTGTAATATAAGCCATGCTTAAT 1152
|||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1157 GATGGAGAATGAACAAATTTAGTTAAGCAATCGACTTGTGTAATATATGCCATGCTTAAT 1216
Query 1153 TAAGACATAAAATGTTATGGTTCAATATATATATCAATTGGAAACTGAGTTCTTAATTAG 1212
|||||| ||||| ||||||||||||||||| ||| || |||||||||||||||||| |||
Sbjct 1217 TAAGACGTAAAACGTTATGGTTCAATATAT-TAT-AAGTGGAAACTGAGTTCTTAAATAG 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5