BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487101
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03290.1 | Symbols: IDH-V | isocitrate dehydrogenase V | chr... 2423 0.0
AT3G09810.1 | Symbols: IDH-VI | isocitrate dehydrogenase VI | c... 1179 0.0
> AT5G03290.1 | Symbols: IDH-V | isocitrate dehydrogenase V | chr5:793974-796182
FORWARD LENGTH=1437
Length=1437
Score = 2423 bits (1312), Expect = 0.0
Identities = 1393/1431 (97%), Gaps = 10/1431 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctcGAATAATAATTTTTCATTTGCTGCGTCCTTCTGGTGCTTGAAGAGA 60
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 11 TCTTTCTCTCTCTCGAATAATAATTTTTCATTTGCTGCGTCCTTTTGGTGCTTGAAGCGA 70
Query 61 TGACCATGGCAGCAAATCTCGCGCGACGGCTGATCGGAGGAAACCGATCGACTCAGATCC 120
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 71 TGACCATGGCAGCAAATCTAGCGCGACGGCTGATC---GGAAACCGATCGACTCAGATCC 127
Query 121 TTGGTGCTGTGAACTCTAGCTCAGGTGCGGCTACTTCCGTCGCTAGGGCTTTCTGCTCCT 180
|||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 128 TTGGAGCCGTGAACTCTAGCTCAGGTGCGGCTAGTTCTGTCGCTAGGGCTTTCTGCTCCT 187
Query 181 CCACCACTCCGATCACCGCAACTCTCTTCCCTGGTGATGGGATCGGTCCCGAGATCGCCG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 188 CCACCACTCCGATCACCGCAACTCTCTTCCCTGGCGATGGGATCGGTCCCGAGATCGCCG 247
Query 241 AATCTGTCAAAAAGGTGTTTACAACTGCTGGTGTGCCAATTGAGTGGGAAGAACACTATG 300
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 248 AATCTGTCAAAAAGGTGTTTACAACAGCTGGTGTACCAATTGAGTGGGAAGAACACTATG 307
Query 301 TTGGGACTGAGATAGATCCGAGAACACAGAGTTTCTTGACATGGGAAAGTCTCGAATCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTGGGACTGAGATAGATCCGAGAACACAGAGTTTCTTGACATGGGAAAGTCTCGAATCTG 367
Query 361 TGCGTAGAAACAAAGTTGGTTTGAAAGGTCCAATGGCTACTCCAATTGGGAAAGGTCACC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGCGTAGAAACAAAGTTGGTTTGAAAGGTCCAATGGCTACTCCAATTGGGAAAGGTCACC 427
Query 421 GTTCTTTGAACCTGACTCTTAGGAAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GTTCTTTGAACCTGACTCTTAGGAAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTT 487
Query 481 ACAGTCTTCCTGGTTACAAAACTCGTTACGATGACGTTGATCTCATTACCATCAGAGAAA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 488 ACAGTCTTCCTGGTTACAAAACTCGTTACGATGATGTTGATCTCATTACCATCAGAGAAA 547
Query 541 ACACGGAAGGAGAATACAGTGGCCTTGAACATCAGGTTGTTAGAGGTGTGGTTGAAAGTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 548 ACACGGAAGGAGAATACAGTGGCCTTGAACATCAGGTTGTTAGAGGTGTGGTGGAAAGTC 607
Query 601 TTAAAGTCATTACCCGTCAGGCGAGTTTGAGAGTTGCAGAGTATGCGTTTCTCTATGCCA 660
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 608 TTAAAATCATTACCCGTCAGGCGAGTTTGAGAGTTGCAGAGTATGCTTTTCTCTATGCCA 667
Query 661 AGACTCATGGAAGAGAGAGAGTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AGACTCATGGAAGAGAGAGAGTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTG 727
Query 721 ACGGTCTTTTTCTCAAGTGTTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATAACTTACG 780
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 728 ACGGTCTCTTTCTCAAGTGTTGTCGTGAGGTTGCTGAGAAGTATCCTGAGATCACTTACG 787
Query 781 AGGAGGTCGTTATTGACAACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AGGAGGTCGTTATTGACAACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATG 847
Query 841 TCTTGGTGATGCCAAACCTGTACGGTGACATTATTAGTGATCTGTGTGCCGGATTGGTTG 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 848 TCTTGGTGATGCCAAACCTGTACGGTGACATTATTAGCGATCTGTGTGCCGGATTGGTTG 907
Query 901 GAGGACTAGGATTGACTCCAAGTTGTAATATCGGAGAAGATGGCGTAGCCCTTGCTGAAG 960
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 908 GAGGACTAGGATTGACTCCAAGTTGTAATATTGGAGAAGATGGTGTAGCCCTTGCTGAAG 967
Query 961 CAGTTCACGGTTCTGCACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CAGTTCACGGTTCTGCACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGC 1027
Query 1021 TTCTGAGTGGAGTGATGATGTTGCGTCACCTGAAGCTCAACGAACAAGCAGAACAAATCC 1080
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1028 TTCTGAGTGGAGTGATGATGTTGCGTCACCTGAAGTTCAACGAACAAGCAGAACAAATCC 1087
Query 1081 ACAGTGCAATCATCAACACCATAGCAGAGGGAAAATACAGAACCGCGGATCTTGGAGGTA 1140
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1088 ACAGTGCAATCATCAACACCATAGCAGAGGGCAAATACAGAACCGCGGATCTTGGAGGTA 1147
Query 1141 GTTCGACCACCACGGAATTCACAAAGGCAATCTGTGATCATCTCTGAACATCGTAAAGTC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1148 GTTCGACCACCACGGAATTCACAAAGGCAATCTGTGATCATCTCTGAACATCGTAAAATC 1207
Query 1201 CAATTCTTTATCGAATCTTCATTTGGGAGCCTTTTTTATAGCCTCGAATTCTTCTTGTTT 1260
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CAATTCTTTATCGAATCTTCTTTTGGGAGCCTTTTTTATAGCCTCGAATTCTTCTTGTTT 1267
Query 1261 -CTTGTTTTACGATTAGAATaaaagaaaaaag-aaaaaaaCGGCTCTTCATGAGTTTTGA 1318
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1268 TCTTGTTTTACGATTAGAATAAAAGAAAAA-GCAAAAAAACGGCTCTTCATGAGTTTTGA 1326
Query 1319 AGTTATTATTTCTGCCTTAAAATTTCTTTGCCGTAAGGCAAGA---TTGATAACACTGGA 1375
||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 1327 AGTTATTGTTTCTGCCTTAAAATTTCTCTGCCGTAAGGCAAGAAGATTCATAACACTGGA 1386
Query 1376 AAA-GTGATGTTCTTTCTGAATCCATCAGAAGAATTTTGTTTTGTTGCTTG 1425
||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1387 AAAAGTGATGTTCTTTCTGAATCGATCAGAAGAATTTTGTTTTGTTGCTTG 1437
> AT3G09810.1 | Symbols: IDH-VI | isocitrate dehydrogenase VI |
chr3:3008694-3011437 FORWARD LENGTH=1551
Length=1551
Score = 1179 bits (638), Expect = 0.0
Identities = 1003/1175 (85%), Gaps = 41/1175 (3%)
Strand=Plus/Plus
Query 35 CTGCGTCCTTCTG-GTGCTTGAAGAGATGACCATGGCAGCAAATCTCGCGCGACGGCTGA 93
||||||||||||| | ||| |||| |||||||||| ||||| ||||||| ||||||| |
Sbjct 35 CTGCGTCCTTCTGAG-GCTGGAAGCGATGACCATGACAGCATTTCTCGCGAGACGGCTTA 93
Query 94 TCGGAGGAAACCGATCGA-CTCAGATCCTTGGTG-CTGT-GAACTCTAGCTCAGGTGCGG 150
|| || ||| |||||| | ||||| || || | || | || |||||||| ||| | |
Sbjct 94 TC---GGTAACGGATCGAGC-CAGATTCTCGG-GACT-TCGAGTTCTAGCTCCGGT-CCG 146
Query 151 CT-ACTTCCGTCGCTAGGGCTTTCTGCTCCTCCACCACTCCGATCACCGCAACTCTC-TT 208
| | |||||| |||||||||||| ||||||| |||||||||||| || |||||| ||
Sbjct 147 TTCATTTCCGTTTCTAGGGCTTTCTTCTCCTCCTCCACTCCGATCAAAGCTACTCTCTTT 206
Query 209 CCCTGGTGATGGGATCGGTCCCGAGATCGCCGAATCTGTCAAAAAGGTGTTTACAACTGC 268
||| |||||||||||||||||||| ||||| ||||||||||| |||||||||| | ||
Sbjct 207 CCC-GGTGATGGGATCGGTCCCGAAATCGCTGAATCTGTCAAGCAGGTGTTTACTGCCGC 265
Query 269 TGGTGTGCCAATTGAGTGGGAAGAACACTATGTTGGGACTG-AGATAGATCCGAGAA-CA 326
|| |||| ||||| ||||| ||||| | |||||| |||| || ||||||| |||| ||
Sbjct 266 TGATGTGGTTATTGATTGGGACGAACAGTTTGTTGGTACTGAAG-TAGATCCTAGAACCA 324
Query 327 CAGAGTTTCTTGACATGGGA-AAGTC-TCGAATCTGTGCGTAGAAACAAAGTTGGTTTGA 384
| ||||||||||||||||| || || || ||||||||| || |||||| ||||||||||
Sbjct 325 -ATAGTTTCTTGACATGGGATAA-TCTTC-AATCTGTGCTTAAAAACAAGGTTGGTTTGA 381
Query 385 AAGGTCCAATGGCTACTCCAATTGGGAAA-GGTCACCGTTCTTTGAACCTGACTCTTAGG 443
|||| |||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 382 AAGGACCAATGGCTACTCCAATT-GGAAAGGGTCACCGTTCCTTGAACCTTACTCTTAGG 440
Query 444 AAAGAGCTTAATCTATATGCCAATGTTAGACCTTGTTACAGTCTTCCTGGTTACAAAACT 503
|||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 441 AAAGAGCTGAATTTGTATGCCAATGTTAGGCCTTGTTACAGTCTTCCTGGTTACAAAACC 500
Query 504 CGTTACGATGACGTTGATCTCATTACCA-TCAGAGAAAACACGGAAGGAGAATACAGTGG 562
||||| ||||| |||||||||||||||| || | || ||||| |||||||| ||||||||
Sbjct 501 CGTTATGATGATGTTGATCTCATTACCATTC-GTGAGAACACTGAAGGAGAGTACAGTGG 559
Query 563 CCTTGAACATCAGGTTGT-TAGAGGTGTGGTTGAAAGTCTTAAAGTCATTACCCGTCAGG 621
|||||||| ||||| || || ||||| || |||||||||||| | ||||||||| |||
Sbjct 560 GCTTGAACACCAGGTCGTCAAG-GGTGTAGTGGAAAGTCTTAAAATTATTACCCGTAAGG 618
Query 622 CGAGTTTGAGAGTTGCAGAGTATGCGTTTCTCTATGCCAAGACTCATGGAA-GAGAGAGA 680
||||| |||||||||| |||||||| ||||| |||||||||||||| |||| || ||| |
Sbjct 619 CGAGTATGAGAGTTGCCGAGTATGCCTTTCTTTATGCCAAGACTCACGGAAGGA-AGAAA 677
Query 681 GTTTCTGCTATCCACAAAGCCAACATTATGCAGAAAACTGACGGTCTTTTTCT-CAAGTG 739
|||||||| || ||||||||||||||||||||||||||||| |||||||| || | ||||
Sbjct 678 GTTTCTGCAATTCACAAAGCCAACATTATGCAGAAAACTGATGGTCTTTTCCTGC-AGTG 736
Query 740 TTGTCG-TGAGGTTGCTGAGAAGTATCCTGAGATA-ACTTACGAGGAGGTCGTTATTGAC 797
|||| | ||| ||||||| |||||||||||||||| | ||||||| |||| |||||||||
Sbjct 737 TTGT-GATGAAGTTGCTGCGAAGTATCCTGAGATATA-TTACGAGAAGGTTGTTATTGAC 794
Query 798 AACTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAAC 857
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AATTGCTGTATGATGCTTGTGAAAAACCCAGCACTTTTTGATGTCTTGGTGATGCCAAAT 854
Query 858 CTGTACGGTGACATTATTAGTGATCTGTGTGCCGGA-TTGGTTGGAGGACTAGGATTGAC 916
|| || || || ||||| || ||| ||||||| ||| ||| |||| ||||||||| ||||
Sbjct 855 CTCTATGGAGATATTATCAGCGATTTGTGTGCTGGACTTG-TTGGGGGACTAGGACTGAC 913
Query 917 TCCAAGT-TGTAATATCGGAGAAGATGGCGTAGCCCTTGCTGAAGCAGTTCACGGTTCTG 975
||| ||| || ||||| || || ||||| | |||||||||||||| |||||||| ||||
Sbjct 914 TCCTAGTATG-AATATTGGGGAGGATGGTATTGCCCTTGCTGAAGCTGTTCACGGCTCTG 972
Query 976 CACCTGATATCGCTGGAAAGAACTTGGCGAACCCAACCGCGTTGCTTCTGAGTGGAGTGA 1035
|||||||||| ||||||| |||| ||||||||||||| || ||||| |||||||||||||
Sbjct 973 CACCTGATATTGCTGGAATGAACCTGGCGAACCCAACAGCTTTGCTACTGAGTGGAGTGA 1032
Query 1036 TGATGTTGCGTCACCTGAAGCTCAACGAACAAGCAGAACAAATCCACAGTGCAATCATCA 1095
|||||||||| ||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 1033 TGATGTTGCGGCACCTGAAGCTCAACAAACAAGCAGAGCAAATCCACAGTGCCATCATCA 1092
Query 1096 ACACCATAGCAGAGGGAAAATACAGAACCGCGGATCTTGGAGGTAGTTCGACCACCACGG 1155
|||| ||||| |||||||| || ||||| || ||||| |||||| || || || || |
Sbjct 1093 ACACAATAGCCGAGGGAAAGTATAGAACTGCTGATCTCGGAGGTTCCTCAACTACAACAG 1152
Query 1156 AATTCACAAAGGCAATCTGTGATCATCTCTGAACA 1190
| |||||||| || |||||||||||||||| ||||
Sbjct 1153 ATTTCACAAAAGCCATCTGTGATCATCTCTAAACA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5