BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487124
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03470.1 | Symbols: ATB' ALPHA | Protein phosphatase 2A regu... 2841 0.0
AT3G09880.1 | Symbols: ATB' BETA | Protein phosphatase 2A regul... 1332 0.0
> AT5G03470.1 | Symbols: ATB' ALPHA | Protein phosphatase 2A regulatory
B subunit family protein | chr5:866449-869024 FORWARD
LENGTH=1986
Length=1986
Score = 2841 bits (1538), Expect = 0.0
Identities = 1784/1897 (94%), Gaps = 39/1897 (2%)
Strand=Plus/Plus
Query 27 TCTCGCTCGCTCGCCGGTTAAAATCGCTGTCCAAATCTCCGGTCATTTCTCCGAGGATCT 86
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 46 TCTCTCTCGCTCGCCGGGAAAAATCGCTGTCCAAATCTCCGGTCATTTCTCCGAGGATCT 105
Query 87 CTTCTATCAATCCAACGG-TTCGATTTTCATCTCCTCAGATCTCACAGAAC-ATACTCGA 144
|||||||||||||||||| || | ||||||||| ||||||||||||||||| ||| || |
Sbjct 106 CTTCTATCAATCCAACGGTTTTG-TTTTCATCTTCTCAGATCTCACAGAACAATAGTCAA 164
Query 145 AGACTGATGCAGAAGAAGCGTTAGTAGAAGGTTTTTGTTGGAAAGC-----AAT-TG-A- 196
|||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
Sbjct 165 AGACTGATGCAGAAGAAGCGTTAGTACAAGGTTTTTGTTGGAAAGCAATTGAATCTGAAT 224
Query 197 --A----TC----TGA-G---GGATCCAA-TTGAGTTCTCTCTTCCACTGAATCTCTCGT 241
| || | | | ||||||| |||||||||||||||||||||||| ||| |
Sbjct 225 TCATCTTTCATTTTCACGCTTTGATCCAATTTGAGTTCTCTCTTCCACTGAATCCCTCAT 284
Query 242 TCGCAAAACCTAGGGTTTCTAAATTAGGGTTCT-CTGAGGTCTGTTTAAAGTGCGT-AAG 299
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 285 ACGTAAAACCTAGGGTTTCTAAATTAGGGTTCTCCTGAGGTCTGTTTATAGTGCGTAAAG 344
Query 300 CCATGTTTAAGAAGATCATGAAAGGGGCAAATCGAAAAGCCTCTAAAGCTGAGGCAAATG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 345 CCATGTTTAAGAAGATCATGAAAGGGGCAAATCGAAAAGCCTCTAAAGCTGAGGCGAATG 404
Query 360 ATTCGTCTATGTATGGGTTTGATCCACCAGGTAGGTCAGGTCCTGGATCCAATATGATTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 ATTCGTCTATGTATGGGTTTGATCCACCAGGTAGGTCAGGTCCTGGATCCAATATGATTG 464
Query 420 TAAATCACGCATCTCGTGGTTCGCTTGTTCCTTCTTCTCCAGGTTCAAT---GGCGGCCA 476
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 465 TAAATCACGCATCTCGTGGTTCGCTTGTTCCTTCTTCTCCAAATTCAATGGCGGCGGCCA 524
Query 477 CCACACAACCGCCTCCTATGTATTCAGTCGAGCCTCTTCCGTTGTTCAGAGACGTGTCTG 536
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 525 CCACACAACCGCCTCCTATGTATTCAGTCGAGCCTCTTCCCTTGTTCAGAGACGTCTCTG 584
Query 537 TTTCCGACCGTCAATCTTTGTTCTTGAGGAAACTCCAGATTTGTTGTTTTCAATTTGATT 596
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCTCCGAGCGTCAATCCTTGTTCTTGAGGAAACTCCAGATTTGTTGTTTTCAATTTGATT 644
Query 597 TTACGGATACGTTGAAGAATGCGAGAGAGAAGGAGATTAAGAGGCAAACGTTATTGGAGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTACGGATACGTTGAAGAATGCGAGAGAGAAGGAGATTAAGAGGCAAACGTTATTGGAGC 704
Query 657 TAGTTGATTTTATACAGTCTGGAGCAGGGAAGCTCTCTGAAGTTTGTCAAGAAGAAATGG 716
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 705 TAGTTGATTTTATACAGTCTGGAGCAGGGAAGCTCACTGAAGTTTGTCAAGAAGAAATGG 764
Query 717 TAAAGATGATTTCGGTTAATATATTCCGGTGTCTTCCTCCGGCTTCACACGAGAATACAG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TAAAGATGATTTCGGTTAATATATTCCGGTGTCTTCCTCCGGCTTCACACGAGAATACAG 824
Query 777 GTCAAGAGCCTGCTGATCTTGAGGAAGAGGAGCCTTATTTGGAACCATCTTGGCCTCATT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GTCAAGAGCCTGCTGATCTTGAGGAAGAGGAGCCTTATTTGGAACCATCTTGGCCTCATT 884
Query 837 TACAGCTAGTTTATGAGTTGTTGCTGAGATACATTGTTCCTTCTGACACAGATACAAAGG 896
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 885 TACAGCTAATTTATGAGTTGCTGCTGAGATACATTGTTCCTTCTGACACAGATACAAAAG 944
Query 897 TTGCGAAACGGTATATTGACCATTCTTTTGTGTTGAGGTTGCTTGAATTGTTTGAGACTG 956
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 945 TTGCAAAACGGTATATTGATCATTCTTTTGTGTTGAGGTTGCTTGAATTGTTTGAAACTG 1004
Query 957 AAGATCCAAGAGAAAGGGAGTACTTGAAAACGATTCTTCATAGGATTTATGGGAAGTTTA 1016
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1005 AAGATCCTAGAGAAAGGGAGTACTTGAAAACGATTCTTCATAGGATTTATGGCAAGTTTA 1064
Query 1017 TGGTCCACAGGCCCTTTATTAGGAAAGCAATGAACAATATATTCTATAGGTTTATTTATG 1076
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1065 TGGTTCACAGGCCCTTTATTAGGAAAGCAATGAACCATATTTTCTATAGGTTTATTTATG 1124
Query 1077 AGACAGAGAGACATAGTGGGATTGGGGAGCTTTTGGAGATTCTGGGTAGTATTATAAATG 1136
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1125 AGACAGAGAGACATAGTGGGATTGGGGAGCTTTTGGAGATTCTCGGTAGTATTATTAATG 1184
Query 1137 GGTTTGCCTTGCCAATGAAGGAGGAGCACAAGCTCTTTTTGATCAGGGCTTTGATACCTC 1196
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1185 GGTTTGCCTTGCCAATGAAGGAGGAGCACAAGCTCTTTTTGATTAGGGCGTTGATACCGC 1244
Query 1197 TGCATAAGCCAAAACCAATTGCTATGTATCATCAACAATTGTCTTACTGCATTGTTCAGT 1256
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1245 TGCATAAGCCAAAACCAATCGCTATGTATCACCAACAATTGTCTTACTGCATCGTTCAGT 1304
Query 1257 TTGTGGAGAAAGATTATAAGCTTGCGGATACAGTAATTAGGGGGTTGTTAAAGTTTTGGC 1316
||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 1305 TTGTGGAGAAAGATTATAAGCTTGCGGATACGGTGATCAGGGGCTTGTTAAAGTTTTGGC 1364
Query 1317 CTGTGACAAACTGTACAAAAGAGGTTCTCTTTCTCGGTGAACTTGAAGAAGTTCTTGAGG 1376
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1365 CTGTGACAAATTGTACAAAAGAGGTTCTCTTTCTTGGTGAACTTGAAGAGGTTCTTGAGG 1424
Query 1377 CAACACAAACTGTTGAGTTCCAACGCTGTATGGTCCCTCTGTTCCAACAGATTGCTCGGT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1425 CAACACAAACTGTTGAGTTCCAACGCTGTATGGTCCCTCTGTTCCAACAGATTGCTCGAT 1484
Query 1437 GCCTCAGCAGCTCTAATTTTCAGGTTGCAGAACGAGCTCTGTTCTTGTGGAACAATGAGC 1496
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1485 GCCTCAGTAGCTCTAATTTTCAGGTTGCAGAACGAGCTCTGTTCTTGTGGAACAACGAGC 1544
Query 1497 ACGTTGTAGGTCTAATAGCGCAGAACCGAGGTGTGATCCTTCCCATCATATTTGCATCCC 1556
| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1545 ATGTGGTGGGTCTAATAGCTCAGAACCGAGGAGTGATCCTTCCCATCATATTTGCATCCC 1604
Query 1557 TGGAGAGAAACATAGAGTCTCACTGGAACCAAGCTGTACACGGTTTAAGCGCGAATATAA 1616
|||||| ||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||
Sbjct 1605 TGGAGAAAAACATAGAGTCTCATTGGAACCAAGCGGTACACGGTCTAAGTGCGAATATAA 1664
Query 1617 AAAGAATGTTCATGGAGATGGACCCTGAGCTCTTTGAAGATTGCCAGCAACAGTACGAAG 1676
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1665 AGAGAATGTTCATGGAGATGGACCCTGAGCTCTTTGAAGAATGTCAGCAACAGTACGAAG 1724
Query 1677 AGAAACAAGCCAAATCGAAACAAGTGGAAGAACAACGCCAAAGTAGGTGGAGGAGATTAG 1736
| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1725 AAAAACAAGCCAAATCTAAACAAGTGGAAGAGCAACGCCAAAATAGGTGGAGGAGATTAG 1784
Query 1737 ATGAAGCGGTGGAAGAACGAGAAAGAGAAGATCCTATGATCACTTCTTAGaaaaaaaaaT 1796
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1785 ATGAAGCAGTGGAGGAACGAGAAAGAGAAGATCCTATGATCACTTCTTAGAAAAAAATAT 1844
Query 1797 ATCAAATCATCATAAGTAATAATATTCTTTCTCTTTCACTTATCTTCTCATTTTCACTAA 1856
|||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||
Sbjct 1845 ATCAAATCATCA-AAGTAATAATATTCT--CTCT--CACTT--CTTCTCATTTTCTCTAA 1897
Query 1857 TCGTTGCAAAattattatattttatttatttattttG 1893
|||||||||| ||||||||||||||||||||||||||
Sbjct 1898 TCGTTGCAAA-TTATTATATTTTATTTATTTATTTTG 1933
> AT3G09880.1 | Symbols: ATB' BETA | Protein phosphatase 2A regulatory
B subunit family protein | chr3:3029511-3032256 FORWARD
LENGTH=2216
Length=2216
Score = 1332 bits (721), Expect = 0.0
Identities = 1235/1479 (84%), Gaps = 51/1479 (3%)
Strand=Plus/Plus
Query 292 TGCGTAAGCCATGTTTAAGAAGATCATGAAA-G-GGGCAAATCGAAAAG-CCTCTAAAGC 348
||||||||||||||||||||| ||||||||| | |||| |||| |||| |||||||| |
Sbjct 382 TGCGTAAGCCATGTTTAAGAAAATCATGAAAGGTGGGC--ATCG-AAAGCCCTCTAAATC 438
Query 349 TGAGGCAAATGATTCGTCTATG-TATGGGTTTGATCCACC--A-GGTAGGTCAGGTCCTG 404
|| || ||||| |||||| | |||||| ||| || ||| | ||||||||||||||
Sbjct 439 CGAAGCTAATGAACCGTCTA-GTTATGGGATTGGTCTACCTGATAATAGGTCAGGTCCTG 497
Query 405 GATCCAATATGATTGTAAATCACGCATCTCGTGGTTCGC-TT-GTTCCTTCTTCTCCAGG 462
| |||||| || | || | |||||| |||||||| | || || ||| ||||||||| |
Sbjct 498 GCTCCAATGTGGTCGTTAGTCACGCTTCTCGTGG-T-GCATTGGTTAATTCTTCTCC--G 553
Query 463 T--TCAATGGCGGCCAC-CACACAACCGCCTCCTATGTATTCAGTCGAGCCTCTTCCGTT 519
| || || | || || | ||| || || ||| || || || ||||| || |||||
Sbjct 554 TCGCCAGTGACTGCAACTC-CACCTCCTCCGCCTTTGGGCTCGGTGGAGCCACTCCCGTT 612
Query 520 GTTCAGAGACGTGTCTGTTTCCGACCGTCAATCTTTGTTCTTGAGGAAACTCCAGATTTG 579
||| ||||| ||| | ||||| || | ||| ||||||||||||||||||| |||| |||
Sbjct 613 GTTTAGAGATGTGCCGGTTTCAGAGAGGCAAACTTTGTTCTTGAGGAAACTTCAGAATTG 672
Query 580 TTGTTTTCAATTT-GATTTTACGGATACG-TTGAAGAATGCGAGAGAGAAGGAGATTAAG 637
|| |||| ||| ||||| || || ||| || |||||||| ||||| ||||||||||||
Sbjct 673 CTG-TTTCCTTTTCGATTTCACTGACACGATT-AAGAATGCTAGAGACAAGGAGATTAAG 730
Query 638 AGGCAAACGTTATTGGAGCTAGTTGATTTTATACAGTCTGGAGC-AGGGAAGCTCTCTGA 696
||||||||||| |||||||| || |||||||||||||||||| | | | ||| |||| |
Sbjct 731 AGGCAAACGTTGTTGGAGCTGGTGGATTTTATACAGTCTGGATCTA-GTAAGATCTCAG- 788
Query 697 AGT-TTGTCAAGAAGAAATGGTAAAGATGATTTCGGTTAATATATTCCGGTGTCTTCCTC 755
||| ||||| ||||||||| | ||||||||||| |||||||| ||||||| ||| || |
Sbjct 789 AGTCGTGTCAGGAAGAAATGATTAAGATGATTTCTGTTAATATTTTCCGGTCTCTCCCAC 848
Query 756 CGGCTTCACACGAGAATACAGGTCAAGAGCCTGCTGATCTTGAGGAAGAGGAGCCTTATT 815
| || |||||||||||||| |||||||||||||| |||| ||||||||| || |||||||
Sbjct 849 CAGCATCACACGAGAATACGGGTCAAGAGCCTGCAGATCCTGAGGAAGAAGAACCTTATT 908
Query 816 TGGAACCATCTTGGCCTCATTTACAGCTAGTTTATGAGTTGTTGCTGAGATACATTGTTC 875
||||||| ||||||||||| |||||||||||||| |||||| | |||||||| |||||
Sbjct 909 TGGAACCTTCTTGGCCTCACTTACAGCTAGTTTACGAGTTGCTCCTGAGATATGTTGTTT 968
Query 876 CTTCTGACACAGATACAAAGGTTGCGAAACGGTATATTGACCATTCTTTTGTGTTGAGGT 935
| ||||||| ||||||||||| || ||||||||||| ||||||||||||||||| | ||
Sbjct 969 CGACTGACACTGATACAAAGGTGGCCAAACGGTATATCGACCATTCTTTTGTGTTAAAGT 1028
Query 936 TGCTTGAATTGTTTGAGACTGAAGATCCAAGAGAAAGGGAGTACTTGAAAACGATTCTTC 995
|||| || |||||||| |||| || |||||||| |||||||| ||||||||||||||||
Sbjct 1029 TGCTCGATTTGTTTGATTCTGAGGACCCAAGAGAGAGGGAGTATTTGAAAACGATTCTTC 1088
Query 996 ATAGGATTTATGGGAAGTTTATGGTCCACAGGCCCTTTATTAGGAAAGCAATGAACAATA 1055
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1089 ATAGGATATATGGGAAGTTTATGGTCCACAGACCCTTTATTAGGAAAGCAATCAACAACA 1148
Query 1056 TATTCTATAGGTTTATTTATGAGACAGAGAGACATAGTGGGATTGGGGAGCTTTTGGAGA 1115
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1149 TATTCTATAGGTTTATTTATGAGACAGAGAGACACAGTGGGATTGGGGAACTCTTGGAGA 1208
Query 1116 TTCTGGGTAGTATTATAAATGGGTTTGCCTTGCCAATGAAGGAGGAGCACAAGCTCTTTT 1175
|||| || ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || |
Sbjct 1209 TTCTAGGCAGTATCATAAACGGGTTTGCATTGCCTATGAAGGAGGAACACAAGCTATTCT 1268
Query 1176 TGATCAGGGCT-TTGATACC-TCTGCATAAGCCAAAACCAATTGCTATGTATCATCAACA 1233
| ||||||| | |||||||| | ||||||||||||||||||| | | | |||||||| ||
Sbjct 1269 TAATCAGGG-TGTTGATACCAT-TGCATAAGCCAAAACCAATCGTTGTATATCATCAGCA 1326
Query 1234 ATTGTCTTACTGCATTGTTCAGTTTGTGGAGAAAGATTATAAGCTTGCGGATACAGTAAT 1293
|| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1327 GTTATCTTATTGCATCGTTCAGTTTGTGGAAAAAGATTATAAGCTTGCGGATACAGTAAT 1386
Query 1294 TAGGGGGTTGTTAAAGTTTTGGCCTGTGACAAACTG-TACAAAAGAGGTTCTCTTTCTCG 1352
||||| |||||||||| |||||| ||||||||||| | |||| ||| |||||| || |
Sbjct 1387 CAGGGGATTGTTAAAGTATTGGCCCGTGACAAACTGCT-CAAAGGAGAATCTCTTCCTTG 1445
Query 1353 GTGAACTTGAAGAAGTTCTTGAGGCAACACAAACTGTTGAGTTCCAACGCTGTATGGTCC 1412
| ||||||||||||||||||||||||||||| |||| |||||||| || || ||||| |
Sbjct 1446 GAGAACTTGAAGAAGTTCTTGAGGCAACACAGCCTGTCGAGTTCCAGCGTTGCATGGTTC 1505
Query 1413 C-TCTGTTCCAACAGATTGCTCGGTGCCTCAGC-AGCTCTAATTTTCAGGTTGCAGAACG 1470
| | | |||||||| |||| ||| || |||| | ||||| | |||||||||||||||||
Sbjct 1506 CAT-TATTCCAACAAATTGGTCGCTGTCTCA-CTAGCTCCCACTTTCAGGTTGCAGAACG 1563
Query 1471 AGCTCTGTTCTTGTGGAACAATGAGCACGTTGTAGGTCTAATAGCGCAGAACCGAGGTGT 1530
||| ||||||||||||||||| |||||| |||| |||||||| ||||| |||||| | ||
Sbjct 1564 AGCACTGTTCTTGTGGAACAACGAGCACATTGTGGGTCTAATCGCGCAAAACCGAAGCGT 1623
Query 1531 GATCCTTCCCATCATATTTGC-ATCCCTGGAGA-GAAACATAGAGTCTCACTGGAACCAA 1588
||||||||| ||||||| | | | | ||||||| ||| ||| |||||||||||||||||
Sbjct 1624 GATCCTTCCAATCATATATCCCA-CACTGGAGAAGAA-CATCCAGTCTCACTGGAACCAA 1681
Query 1589 GCTGTACACGGTTTAAGCGCGAATATAAA-AAGAATGTTCATGGAGATGGACCCTGAGCT 1647
|| || || ||| ||| | | ||||| || || |||||||||||| ||||| ||||| ||
Sbjct 1682 GCAGTTCATGGTCTAACCACAAATATCAAGAA-AATGTTCATGGAAATGGATCCTGAACT 1740
Query 1648 CTTTGAAGATTGCCAGCA-ACAGTACGAAGAGAAACAAGCCAAATCGAAACAAGTGGAAG 1706
|||||||| || ||| | |||||| |||||||||||||| ||||| ||| |||| ||||
Sbjct 1741 GTTTGAAGAATGTCAG-AGACAGTATGAAGAGAAACAAGCGAAATCCAAAGAAGTAGAAG 1799
Query 1707 AACAACGCCAA-AGTAGGTGGAGGAGATTAG-ATGAAGC 1743
||||||| ||| | || |||| |||||||| | |||||
Sbjct 1800 AACAACGGCAATA-TACATGGAAGAGATTAGCA-GAAGC 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5