BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487134
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03555.1 | Symbols: | permease, cytosine/purines, uracil, t... 2920 0.0
> AT5G03555.1 | Symbols: | permease, cytosine/purines, uracil,
thiamine, allantoin family protein | chr5:898241-900159 REVERSE
LENGTH=1919
Length=1919
Score = 2920 bits (1581), Expect = 0.0
Identities = 1812/1923 (94%), Gaps = 17/1923 (1%)
Strand=Plus/Plus
Query 1 GACTCAATGGTCTCAAATTGCTTAAGCCTTACTCTCCATCCCAATCTTCATCCCCACAAA 60
|||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 1 GACTCAATGGTCTCCAATTGCTTAAGCCTTAGTCTCCATCTCAATCTCCATCCCCACAAA 60
Query 61 CACAATCGTCATTCTCTTTCTTCCTTT-AGATCCCAG-ACAAAAGCTAAACTCTATCAAC 118
|||||||||||||||||||||| |||| ||||| | | ||||||||||||||||||||||
Sbjct 61 CACAATCGTCATTCTCTTTCTT-CTTTAAGATCTC-GCACAAAAGCTAAACTCTATCAAC 118
Query 119 ATGTCTCATTCACAGATTCAAGCCACAAGAGATCCTACACTTCTTGTGTGTCTACCTTTG 178
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 119 ATGTCTCATTCACAGATTCAAGCCACAAGAGTTCCTACACTTCTTGTGTGTCTACGTTCG 178
Query 179 AC-TCACAAAACAAAAGTAGCAAACACTATGAATTGGGCAAGCACAACTTCAGTCCGAGC 237
|| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 179 ACAT-TCAACGCAAAAGTAGCAAACACTATGAATTGGGCAAGCACAGCTTCAGTCCGATC 237
Query 238 CGGCCTGGTTACAACTTGGGTTTGAGCCGATCCGGTGTCATCCGCCCACGACTCTCGGCG 297
| ||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 238 CTGCCTGGTGACAACTTGGTTTTGAGCCGATCTGGTGTCATCCGCCCACGACTCTCAGCG 297
Query 298 ATGACCGGCTCAG-AATCCAATGACTTCGGGTATGACGAATCCCAATTCGACCCATCTCT 356
||||||||||||| ||| |||||| |||||| ||||| ||||||||||||||||| ||
Sbjct 298 ATGACCGGCTCAGAAAT-TAATGACCACGGGTACGACGAGTCCCAATTCGACCCATCCCT 356
Query 357 CACGAATGAAGACTTGAAACCGACAACACCAAGCCAGAGAACGTTTTCATGGTTGGATAT 416
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 CACGAATGACGACTTGAAACCGACAACTCCAAGCCAGAGAACGTTTTCATGGTTGGATAT 416
Query 417 GTCAAGTTTATGGATCGGTCTCGTGGTTGGTGTGCCTACTTACTACCTCGCCGGGAGCCT 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GTCAAGTTTATGGATCGGTCTCGTAGTTGGTGTGCCTACTTACTACCTCGCCGGGAGCCT 476
Query 477 AGTGGATCTTGGCATGGCGTGGTGGCAAGGGATAGCCACAGTGGTTGCTGCCAACCTAAT 536
||||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |||||
Sbjct 477 AGTGGATCTTGGCATGGCGTGGTGGCAAGGGATCGCCACAGTTGTTACAGCCAATCTAAT 536
Query 537 ACTGCTCGTGCCGCTGGTCCTCACCGCTCAGCCTGGCACTCTGTACGGAATTTCCTTCCC 596
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACTACTTGTGCCGCTGGTCCTCACCGCTCAGCCTGGCACTCTGTACGGAATTTCCTTCCC 596
Query 597 TGTCCTTGCTAGATCATCCTTTGGTATCCGTGGAGCTCACATCCCGACTCTACTCAGAGC 656
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTCCTTGCTAGATCATCATTTGGTATCCGTGGAGCTCACATCCCGACTCTACTCAGAGC 656
Query 657 ATTAGTCGGTTGCGGATGGTACGGTATCGAGACATGGATCGGAGGAGAAGCCATCTTCTT 716
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 657 ATTAGTCGGTTGCGGATGGTATGGTATCGAGACATGGATCGGAGGTGAAGCTATCTTCTT 716
Query 717 GCTCTTACCGGCTCACATTAAGAACTCTGCTTTGTCTCATACGCTACCCTGGCTCGGCAC 776
||||||||||| ||| |||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 717 GCTCTTACCGGGTCATATTAAGAAGTCTGCTTTGTCTCATACACTACCTTGGCTCGGCAC 776
Query 777 TTCTCCGCTTGAGTTCTCTTGTTTCATCGTCTTCTGGTTGGCTCAGGTTTGTATTGTCTG 836
|||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 777 TTCTCCCCTTGAGTTCTCTTGTTTTATTGTCTTCTGGTTGGCTCAGCTTTGTATTGTCTG 836
Query 837 GAGAGGAATGGACGGAATCAGAAAGCTAGAAAAGTACTCAGCTCCAATTCTGATCAGTCT 896
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 GAGAGGTATGGATGGAATCAGAAAGCTGGAAAAGTACTCAGCTCCAATTCTGATCAGTCT 896
Query 897 CACTTCCTGCCTCCTTGCCTGGTCCTATCTCAAAGCAGGTGGATTTGGTCACATGCTTTC 956
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 897 CACGTCCTGCCTCCTTGCCTGGTCCTATCTCAAAGCCGGTGGATTTGGTCACATGCTTTC 956
Query 957 CTTGTCATCCAAGCTAACCTCTGCTCAGTTCTGGACTCTCTTCTTCCCCTCGCTAACCGC 1016
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 957 CTTATCATCCAAGCTAACCTCTGCTCAGTTCTGGACTCTCTTCTTCCCGTCCCTAACCGC 1016
Query 1017 AAACATAAGCTTCTGGGCAACTCTAGCTTTAAACATCCCTGATTTTTCACGGTTTGCTAA 1076
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1017 AAACATAAGCTTCTGGGCAACTCTAGCTTTAAACATCCCTGATTTTTCCCGGTTTGCAAA 1076
Query 1077 ATCCCAGACGGATCAAATCATCGGTCAAGTTGGTCTTCCCGTTTTCATGGGTTTGTTTAC 1136
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1077 ATCACAGACGGATCAAATCATCGGTCAAGTTGGTCTTCCTGTTTTCATGGGGTTGTTTAC 1136
Query 1137 GTTCGTCGGCGTAGCTGTTACGTCCTCCACAAGTATCATCTTTGGAAGAGTCATCTCCAA 1196
||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 GTTTGTTGGCGTAGCTGTTACGTCCTCCACAAGTATCATCTTTGGAAGAGTCATATCCAA 1196
Query 1197 TCCGATTGAGCTTCTCGGTCAAATAGGAGGCCTCGCCACAACTCTACTCGCTATTGTTGG 1256
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1197 TCCGATTGAGCTTCTCGGTCAAATTGGAGGCCTCGCCACAACTCTACTCGCTATCGTCGG 1256
Query 1257 AATATCCCTAGCCACACTCACTACAAACATAGCTGCAAACGTGGTCGCGCCAGCAAATGC 1316
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 AATATCCCTAGCCACACTCACTACAAACATAGCTGCAAACGTGGTCGCCCCAGCAAATGC 1316
Query 1317 GCTTGTGAATCTAAACCCTAAGTTTTTCACATTCGGAAGAGGAGCCTTCTTGACCGCAGT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GCTTGTGAATCTAAACCCTAAGTTTTTCACATTCGGAAGAGGAGCCTTCTTGACCGCAGT 1376
Query 1377 TCTTGGTATCGTGTTTCAGCCATGGAGATTGCTCAAATCAAGCGAGAGCTTCGTGTACAC 1436
||| || |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1377 TCTCGGAATCGTGTTTCAGCCATGGAGATTGCTTAAATCGAGCGAGAGCTTTGTGTACAC 1436
Query 1437 TTGGCTCATTGGTTACTCAGCGCTTCTTGGTCCAATCGGTGGCATAATTCTCGTCGATTA 1496
|||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1437 ATGGCTCATAGGGTACTCAGCGCTTCTTGGTCCAATCGGAGGCATAATTCTTGTCGATTA 1496
Query 1497 CTACCTGATCAAGAAGATGAAACTGAACATTGGAGATTTGTACTCTTTGAGTCCCTCCGG 1556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTACCTGATCAAGAAGATGAAACTGAACATTGGAGATTTGTACTCTTTGAGTCCCTCCGG 1556
Query 1557 CGAATATTATTTCTCTAAGGGATACAATGTCGCAGCGGTTGTGGCTTTGGTCGCCGGAAT 1616
||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1557 CGAATATTATTTCTCTAAGGGGTATAATGTCGCAGCGGTCGTCGCTTTGGTCGCCGGAAT 1616
Query 1617 AATCCCAGTCGTGCCTGGTTTTCTACACAAGATCAGAGCTTTGTCGAAGATCTCAAATGG 1676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1617 AATCCCAGTCGTGCCTGGTTTTCTACACAAGATCAGTGCTTTGTCGAAGATCTCAAATGG 1676
Query 1677 GTTCGTCGTTGTTTACGACAACGCTTTGTTTTTCAGCTTCATCATCGCAGGATTTGTCTA 1736
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GTTCGTCGTTGTTTACGACAATGCTTTGTTTTTCAGCTTCATCATCGCAGGATTTGTCTA 1736
Query 1737 TTGGATCATAATGTCTCGTCTGGGAAGGAAACAGAGCTCGTTGTCTTCTTCTTCACGGCC 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 TTGGATCATAATGTCTCGTCTGGGAAGGAAACAGAGCTCGTTGTCTTCTTCTTCACATCC 1796
Query 1797 GCTTTTGTAAATCTT-GTCATTTAATTGGTTTCGTAAGTA--TAAATATAAGTTATCA-- 1851
||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||
Sbjct 1797 GCTTTTGTAAATCTTTG-CATTTAATTGGTTTCGTAAGTAACTAAATATAAGTCATCACA 1855
Query 1852 GATGTAAAATTAAACAGAAGAACAAAA-AAG-GAAATAAAGATTTGTCATTACGGATTTA 1909
||||||||||||||||||||||||||| || ||| | ||| ||||||||||||||
Sbjct 1856 GATGTAAAATTAAACAGAAGAACAAAAGAAAAGAATTGTC-ATTACTCATTACGGATTTA 1914
Query 1910 ATT 1912
|||
Sbjct 1915 ATT 1917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94678227870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5