BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487145
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03660.1 | Symbols: | Family of unknown function (DUF662) ... 1339 0.0
> AT5G03660.1 | Symbols: | Family of unknown function (DUF662)
| chr5:937977-940058 FORWARD LENGTH=860
Length=860
Score = 1339 bits (725), Expect = 0.0
Identities = 812/853 (95%), Gaps = 9/853 (1%)
Strand=Plus/Plus
Query 1 ATTATTAGGATTAAGAAATCCAACGGTCATCGTAGAGCGCATCAGATAAACGGCTAAAAA 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATTAGGAACAAGAAATCCAACGGTCATCGTAGAGCGCATCAGATAAACGGCTAAAAA 60
Query 61 GCAAATTCTCTGGAAGAAGAAGAAGACGAAGATGCAACCGACAGAGACGTCGCGGCCGGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCAAATTCTCTGGAAGAAGAAGAAGACGAAGATGCAACCGACAGAGACGTCGCAGCCGGC 120
Query 121 GTCGGCGGATCAAGGCCGCCGGCTTAAGGATCAGTTGTCCGAGAGTATGAGCTTCAGTAG 180
| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 GCCGTCGGATCAAGGCCGCCGGCTTAAGGATCAGTTATCGGAGAGTATGAGCTTCAGTAG 180
Query 181 CCAAATGAAGAAGGAAGACGATGAGTTGTCGATGAAAGCTTTGTCGGCGTTCAAGGCCAa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCAAATGAAGAAGGAAGACGATGAGTTGTCGATGAAAGCTTTGTCGGCGTTCAAGGCCAA 240
Query 241 agaagaggagatcgagaagaagaagatggagatcagagaaagagTTCAAGCTCAACTTGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGAAGAGGAGATCGAGAAGAAGAAGATGGAGATCAGAGAAAGAGTTCAAGCTCAGCTTGG 300
Query 301 TCGTGTTGAAGATGAGTCCAAGCGTCTCGCTATGATTCGCGAGGAACTTGAAGGTTTTGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGTGTTGAAGATGAGTCCAAGCGTCTCGCTATGATTCGCGAGGAACTTGAAGGTTTTGC 360
Query 361 TGATCCCATGAGGAAGGAAGTTACTATGGTGCGGAAGAAGATTGATTCTCTCGACAAAGA 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TGATCCCATGAGGAAGGAAGTTACTATGGTGAGGAAGAAGATTGATTCTCTCGACAAAGA 420
Query 421 ATTAAAGCCATTGGGGAATACAGTTCAGAAGAAGGAAACAGAGTACAAGGATGCTCTTGA 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 ATTAAAGCCATTGGGGAATACAGTTCAGAAAAAGGAAACAGAGTACAAGGATGCTCTTGA 480
Query 481 AGCATTCAATGAAAAGAACAAGGAGAAGGTGGAGTTGATCACCAAGCTACAGGAGTTGGA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AGCATTCAATGAAAAGAACAAGGAGAAGGTGGAGCTGATCACCAAGCTACAGGAGTTGGA 540
Query 541 GGGAGAAAGCGAGAAACTGAGGTTCAAGAAGCTGGAGGAGCTAAGCAAGAACATTGATCT 600
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAGAAAGCGAGAAATTCAGGTTCAAGAAGCTGGAGGAGCTAAGCAAGAACATTGATCT 600
Query 601 AACCAAACCTTAGTGTTGGACTAGCACAGTCCCTGGGATTGGGCTTTTTAAAAGTTATAA 660
||||||||||||||||||||| |||| |||| |||||||| |||| || ||| ||| |||
Sbjct 601 AACCAAACCTTAGTGTTGGACGAGCAGAGTCGCTGGGATTTGGCTATTCAAA-GTTCTAA 659
Query 661 AAAA-T-ACCGTGTTAGAATATTTTCATTGTTCTTTTATGATTCTAGtaatatata-a-t 716
|||| | || | ||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 660 AAAAGTCACTTT-TTAGAGTATTTTCATTGTTCTTTTATGATTCTAGTAATATATATAAT 718
Query 717 atataaaataaaaaGTAAGAAGATTTG-GTTTTGAACTAGGTGTTGCATAGAAAGTGTAA 775
||||||||||||||||||||||| || |||| ||||||| ||||||| ||||| |||||
Sbjct 719 TTATAAAATAAAAAGTAAGAAGATATGTGTTT-GAACTAGATGTTGCAAAGAAAATGTAA 777
Query 776 CAAAGTTACGATGGCATTACATTTATCGTCGTGATTGGTAGAATTGTAATAATAATGTAA 835
|||||||||||||||| |||||| |||| ||||||||| |||||||||||| ||||||||
Sbjct 778 CAAAGTTACGATGGCACTACATT-ATCGACGTGATTGGCAGAATTGTAATAGTAATGTAA 836
Query 836 AGAAACTATGTTT 848
|||||||||||||
Sbjct 837 AGAAACTATGTTT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5