BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487166 Length=1099 Score E Sequences producing significant alignments: (Bits) Value AT5G03880.1 | Symbols: | Thioredoxin family protein | chr5:103... 1762 0.0 > AT5G03880.1 | Symbols: | Thioredoxin family protein | chr5:1038508-1041480 REVERSE LENGTH=1213 Length=1213 Score = 1762 bits (954), Expect = 0.0 Identities = 1059/1109 (95%), Gaps = 10/1109 (1%) Strand=Plus/Plus Query 1 aaaaaaaaaTTAGAAGAAGAAAAATCGATGGCGGGGATACTAGTGAACAATATCCTCCCT 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAACAAATTAGAAGAAGAAAAATCGATGGCGGGGATACTAGTGAACAATATCCTCCCT 60 Query 61 CAACCTCCGATTCTCCGATCG--GT-TTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTA 117 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 61 CAACCTCCGATTCTCCGATCGCTTTCTTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTA 120 Query 118 GTTATGGTTAAAG---CTTCCTCAGAACCTTCCGAGTCTATTTCAGTGTCCACGAAGACC 174 |||||||| |||| ||||||| ||||||||||||||| ||||||| |||||||||||| Sbjct 121 GTTATGGTCAAAGCTTCTTCCTCTGAACCTTCCGAGTCTGTTTCAGTCTCCACGAAGACC 180 Query 175 AGTGACGACACTGGAGC---TGTTGTGTTCACTGCTCCTCCCGGTTTCAAGCCACCAGAG 231 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| Sbjct 181 AGTGACGACACTGGAGCTGTTGTTGTGTTCACTGCTCCTCCTGGTTTCAAGCCACCGGAG 240 Query 232 CCGAAACGGTTCGCCGTCAAATCCGGAAAACTATTCGATGTCTTGGGTGCAGCAATTGGA 291 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 CCAAAACGGTTCGCCGTCAAATCCGGAAAACTCTTCGATGTCTTGGGTGCAGCAATTGGA 300 Query 292 TTGATTTTCCGATTCGGCACTGGGGTTTTCGTTTCTGGGTACTCTGCATCTTTCGTGTCT 351 ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 301 TTGTTTTTCCGATTCGGCACTGGTGTTTTCGTTTCTGGGTACTCTGCATCTTTTGTGTCT 360 Query 352 AAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAA 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAA 420 Query 412 ACCGCTAAGCTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGT 471 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGT 480 Query 472 CCCTTCTGCCGTAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTGTACTAT 531 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 481 CCCTTCTGCCGGAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTCTACTAT 540 Query 532 CCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAA 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAA 600 Query 592 CAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATC 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATC 660 Query 652 ATCAAATATCTATCTGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGT 711 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATCAAATATCTATCCGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGT 720 Query 712 GCTTTAACGGCTATAACAGCTGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTG 771 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 721 GCTTTAACGGCTATAACAGCAGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTG 780 Query 772 TACACACCTGCGAAACTACCACCTAAGCCACTAGAATTCTGGGCATACGAGGGTTCCCCA 831 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || Sbjct 781 TACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGGGTTCTCCG 840 Query 832 TTCTGCAAGCTTGTACGCGAAGTTCTTGTAGAGCTCGAGTTACCACACATTCAGCGCAGT 891 || || |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 841 TTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTACCACACATTCAGCGCAGT 900 Query 892 TGTGCTCGCGGTAGCCCCAAACGGCAGGAATTGCTCGAGAAAGCTGGTCACTTTCAGGTG 951 |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 901 TGTGCTCGTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGGTG 960 Query 952 CCTTACCTGGAAGATCCAAACACTGGAGTTGCGATGTTTGAGAGTGCAGAAATCGTAGAG 1011 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| Sbjct 961 CCTTACCTGGAAGATCCAAACACTGGAGTCGCGATGTTTGAGAGTGCAGAAATTGTTGAG 1020 Query 1012 TATCTCAAGCAAACTTACGCTGCTTAAGTTTTCTTCTTCCTCACTCTATAC-GTATAGAT 1070 ||||||||||||||||| ||||| ||||| ||| ||||||||||| ||||| |||||||| Sbjct 1021 TATCTCAAGCAAACTTATGCTGCCTAAGTGTTCGTCTTCCTCACTTTATACCGTATAGAT 1080 Query 1071 ACATGTTAATTGTTGTGTGTATGTTCAGC 1099 | ||||||||||||||||||||||||||| Sbjct 1081 ATATGTTAATTGTTGTGTGTATGTTCAGC 1109 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53865184785 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5