BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487211
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04310.1 | Symbols: | Pectin lyase-like superfamily protein... 2495 0.0
> AT5G04310.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:1203203-1207352 REVERSE LENGTH=1710
Length=1710
Score = 2495 bits (1351), Expect = 0.0
Identities = 1608/1725 (93%), Gaps = 45/1725 (3%)
Strand=Plus/Plus
Query 1 ATGGTGGCTCA--CGA-GAGGATCCATAATCTTCAAAAACCAACATGCATTTGCATTATC 57
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGTGGCTCATGAGAGGAGGATCCATAATCTTCAAAAACCAACGTGCATTTGCATTATC 60
Query 58 TGGTTTTGCCTCTTGGTTTCTCTCTCTCACCATGGAAGAGcatcttcatcatcattatca 117
|||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 61 TGGTTTTGCCTCTTGGTTTCTCTCTCTCACCATGGAAGAG------CATCATCA--A-C- 110
Query 118 tcatcatcatctatcttcaatctTTCTCTCCCACACCAACACCCATTCCCTGAACATGTT 177
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 -C-TCAGCATCTATCTTCAATCTTTCTCTCCCACACCAACACCCATTCCCTGAACATGTT 168
Query 178 GTTCTTAATGTTCAAAGAAAACTCAACGACTCTCTCTCAAGAAGACAACTTCTCACTTAC 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 169 GTTCTTAATGTTCAAAGAAAACTCAACGATTCTCTCTCAAGAAGACAACTTCTCACTTAC 228
Query 238 CAACAAGACGACTTCACGACGTCGTCGTCGCCAATACCTTCTTGCATCACCGGAAACCCA 297
|||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 229 CAACAAGACGACGGCACCACGGCGTCGTCACCAATACCTTCTTGCATCACCGGAAACCCA 288
Query 298 ATCGACGATTGTTGGCGCTGCGACCCAAACTGGTCGGAAAATCGCCAAAGACTAGCCGAT 357
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 289 ATCGACGATTGTTGGCGCTGCGACCCAAACTGGTCGGCAAACCGCCAAAGACTCGCCGAT 348
Query 358 TGCTCAATTGGTTTCGGACAAGGAACACTCGGAGGAAAAGGCGGTC-GCTTTTACCTCGT 416
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 349 TGCTCAATTGGTTTCGGACAAGGAACACTCGGAGGAAAAGGCGGTCAG-TTTTACCTCGT 407
Query 417 CACCGATTCCTCCGACAACGACGCGGCGTATCCAATTCCCGGAACACTTCGACACGCCGT 476
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 408 CACCGATTCCTCCGACAACGACGCAGCGAATCCAATTCCCGGAACTCTTCGACACGCCGT 467
Query 477 GATTCAGCCGGAACCACTCTGGATCGTCTTCTCCAGCGACATGGGAATCACACTCAAACA 536
||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 468 GATTCAGCCAGAACCACTATGGATCATCTTCTCCAGCGACATGGGAATCAAACTCAAACA 527
Query 537 CGAGCTCATCATCGGAAGCTACAAAACAATCGATGGAAGAGGAACGAATATCCAAATCAC 596
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 528 CGAGCTCATCATCGGAAGCTACAAGACAATCGATGGAAGAGGCACGAATATCCAAATCAC 587
Query 597 CGGCCATGGTTGCCTCACGATTCAGCAGGTGAGCCATGTCATCATCCACAACGCCCACAT 656
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 588 CGGCCATGGTTGCCTCACGATTCAGCAGGTTAGCCACGTCATCATCCACAACGTTCACAT 647
Query 657 TCACCACTGTAAACCCTCCGGCAACACTTTGGTCGCTTCGTCGCCTACACACGTCGGATT 716
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 648 TCACCACTGTAAACCCTCCGGCAACACTTTGGTCGCTTCGTCGCCTACACATGTTGGATT 707
Query 717 CCGAGGAGTCTCCGACGGAGACGGAATCTCAGTCTCAGCTTCGCATCACATTTGGGTCGA 776
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 708 TCGAGGAGTCTCCGACGGAGACGGAATCTCAGTATCAGCTTCTCATCACATTTGGGTCGA 767
Query 777 TCACTGTTCTCTCGGTTACTGTGCTGACGGACTCATCGACGTCATCCTCGCTTCCACCGC 836
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 768 TCACTGTTCTCTCGGTTACTGTGCGGACGGACTCATCGACGTCATCCTCGCTTCCACCGC 827
Query 837 CGTCACAATTTCCAACAACTATTTCTCTCATCACGACGAAGTTATGCTCTTAGGTCACGA 896
||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 828 CGTCACAATCTCCAACAACTATTTCTCTCATCACGACGAGGTTATGCTCCTAGGTCACGA 887
Query 897 CGACCGGTATACGGCTGACAAGGGGATGCAAGTAACAATTGCATTCAACCATTTCGGAGA 956
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CGACCGGTACACGGCTGATAAGGGGATGCAAGTAACAATTGCATTCAACCATTTCGGAGA 947
Query 957 AGGGCTTGTGCAGAGGATGCCGCGGTGTAGGCACGGTTATATCCACGTGGTGAACAACGA 1016
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 AGGGCTTGTTCAGAGGATGCCGCGGTGTAGGCACGGTTATATCCACGTGGTGAACAACGA 1007
Query 1017 CTTCACGGCATGGGAAATGTATGCAATCGGCGGAAGTGCTAGCCCTACAATTAATAGTCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 CTTCACGGCATGGGAAATGTATGCAATCGGCGGAAGTGCTAGCCCTACAATTAATAGTCA 1067
Query 1077 GGGTAACCGTTACACCGCACCTATTGATCCCAACGCCAAAGAGGTGACGAAGCGCGTGGA 1136
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1068 GGGTAACCGTTACACCGCACCTATTGATCCCAATGCCAAAGAGGTAACGAAGCGCGTGGA 1127
Query 1137 CTCAAACGAGAAACATTGGTCGGGATGGAACTGGAGAACGGAAGGTGACGTTATGGTTAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CTCAAACGAGAAACATTGGTCGGGATGGAACTGGAGAACGGAAGGTGACGTTATGGTTAA 1187
Query 1197 CGGAGCGTTTTTCGTGCCGTCAGGTGACGGAGTGAGCCCAGCGTACGCCAGAGCCACCAG 1256
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1188 CGGAGCTTTTTTCGTGCCGTCAGGTGACGGAGTGAGCCCAGCGTATGCCAGAGCCACCAG 1247
Query 1257 TGTTCAGCCTAAAACCGCCGCCATCATTGACCAGCTCACGGTCAACGCCGGCGTCTTCGG 1316
||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1248 TGTTCAGCCTAAAGCCGCCGCGATCATTGACCAGCTCACGGTCAATGCCGGCGTTTTCGG 1307
Query 1317 CGATCCCAGTGGGAGAAACGGCCAAGGAGGAAGTTTTCCCGGAATAACGGACGGTGGTGG 1376
|||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 1308 CGATCCAAGTGGGAGAAACGGCCAAGGAGGAAGCTTTCCCGGAATTACGAACGGTGGTGG 1367
Query 1377 GACCATCACACGCGGTTACAGTAAAAGTGGACC--C-GGCGGCAGCAGCGGC-G--ATAG 1430
||||||||| ||||||||||||||||||||||| | ||||| |||||||| | | ||
Sbjct 1368 GACCATCACGCGCGGTTACAGTAAAAGTGGACCTGCCGGCGGTGGCAGCGGCAGTGACAG 1427
Query 1431 CGATGATGGCCTTTTCACAGTGATATTCGGTAACAATAGCGGAGCGGTGGCTCTAAGGCC 1490
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1428 TGATGATGGGCTTTTCACATTGATATTCGGTAACAATAGCGGTGCGGTGGCTCTAAGGCC 1487
Query 1491 GGGACAAGTCTGGTCGATTCTATTGATCATTATCATTTTGTTTTGGTATATTCCACACCA 1550
|||||| |||||||||||||||||||| | |||||||| | ||||||||||||||||||
Sbjct 1488 GGGACAGGTCTGGTCGATTCTATTGAT--T-ATCATTTTATATTGGTATATTCCACACCA 1544
Query 1551 TACGAGATGAT-GATTTCATTATTGGTT-AGAGGGTT-CAT--------TGTTAC-a-aa 1597
|||||||| || | |||||||||||||| | || || || || | | ||
Sbjct 1545 TACGAGATCATAG-TTTCATTATTGGTTCATAG--TTACAAAAAAAAAATGAAAAGACAA 1601
Query 1598 aaaaa--aaTATACAAATATATAGGTACACAGCACTTGCAAGTTGTAAAA-TATGGGAAA 1654
||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1602 AAAAACGAATATACAGATATATAGGTACACAGCACTTGCAAGTTGTAAAAATATGGGAAA 1661
Query 1655 TGTATAAAATATTTTTATTCTTGTTTGATGCCTAAACTTTTTTGG 1699
||||||| ||||| | | |||||||||||||||||||| ||||||
Sbjct 1662 TGTATAAGATATTATAAATCTTGTTTGATGCCTAAACTATTTTGG 1706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83985511785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5