BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487253
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04750.1 | Symbols: | F1F0-ATPase inhibitor protein, putati... 597 3e-170
AT5G04760.1 | Symbols: | Duplicated homeodomain-like superfami... 137 9e-32
> AT5G04750.1 | Symbols: | F1F0-ATPase inhibitor protein, putative
| chr5:1372147-1373619 FORWARD LENGTH=598
Length=598
Score = 597 bits (323), Expect = 3e-170
Identities = 492/568 (87%), Gaps = 34/568 (6%)
Strand=Plus/Plus
Query 22 ATCTCACTGATTAGAGCAAAGATGTCGTTGGCTCGTTCTGCGATCACAAAGCTAAGGCTG 81
|||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 38 ATCTCACTGATT--AGC-AAGATGTCGTCGGCTCGTTCTGCGATCACAAAGCTAAAGCTG 94
Query 82 GCTCGATCCCTGTGGG-AGACTCAGATTGGAGCATCGCGTTCGGTGGAATCGACTCGAGG 140
||||||||| | |||| ||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 95 GCTCGATCCTT-TGGGGAGAGGCAGATTGGTGCATCGCGTTCGGTGGTATCGACTCGAGG 153
Query 141 ATCGGCGATTCGGTGTTTCAGCGACGACAAAGGTCGTGTGCTCAGCGAAGAGGAACACGC 200
| |||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 154 ACCGGCGATTCGGTACTTCAGTGACGATAAAGGTCGTGTGCTCAGCGAAGAGGAACGCGC 213
Query 201 GAAAGAGAGCATGTACATCAAGAAAATGGAGAAGGAGATACTGGAGAAGAAGAAGAAACT 260
||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct 214 GAAAGAGAGCATGTATATCCAGAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACT 273
Query 261 AGAGAAACATAAGCCAGATAATGAGAAAGGAAGTGCCGACAAGAAACCTGATG-CAAGCA 319
||| || |||||| |||| |||||||||||||||| ||||||||||||| | ||| ||
Sbjct 274 CGAGCAAGATAAGCTAGATGGTGAGAAAGGAAGTGCCAACAAGAAACCTGA-GACAAACA 332
Query 320 AGCCATGAGTT---CA-TCAC--T-TACAGA-TCGGGTCATAAGGCAAGCAGTTGTGAAA 371
||||||||||| || |||| | |||||| || |||||||||||||||||| ||||||
Sbjct 333 AGCCATGAGTTTATCACTCACAGTATACAGAATCCGGTCATAAGGCAAGCAGTAGTGAAA 392
Query 372 AATAATAATGCCTTTTGACCTTTGTCCCTCTCTTGGTATGAGAT-T-TTGTACTT-T-CT 427
|| |||||||||||| ||||| ||| | ||||||||||||||| | |||||||| | |
Sbjct 393 AACAATAATGCCTTT-GACCTATGTTC-TCTCTTGGTATGAGAGATCTTGTACTTGTACA 450
Query 428 GA--TGTGTG---TT-TG-TGTGT-TGTAACT-TGT---AAGAAATCAAGTTTAAAATAA 475
|| | | | || || ||||| ||| | ||| |||||||||||||||||||||
Sbjct 451 GAGATCTTTAACCTTCTGATGTGTGTGTTTGTGTGTTGTAAGAAATCAAGTTTAAAATAA 510
Query 476 TCGAGAGAAACCCTCCATATGCATTGATTCAAAATACCAAAATGGTTACCAAACATATTT 535
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCGAGAAAAACAA-CCATATGCATTGATTCAAAATACCAAAATGGTTACCAAACATATTT 569
Query 536 GTGTTTACAAAAAGCTTTCCTATACATT 563
||||||||||||||||| ||||||||||
Sbjct 570 GTGTTTACAAAAAGCTTCCCTATACATT 597
> AT5G04760.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:1373530-1374787 REVERSE LENGTH=1128
Length=1128
Score = 137 bits (74), Expect = 9e-32
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 474 AATCGAGAGAAACCCTCCATATGCATTGATTCAAAATACCAAAATGGTTACCAAACATAT 533
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AATCGAGA-AAAACAACCATATGCATTGATTCAAAATACCAAAATGGTTACCAAACATAT 1070
Query 534 TTGTGTTTACAAAAAGCTTTCCTATACATT 563
||||||||||||||||||| ||||||||||
Sbjct 1069 TTGTGTTTACAAAAAGCTTCCCTATACATT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27025971086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5