BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487267 Length=921 Score E Sequences producing significant alignments: (Bits) Value AT5G04830.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 972 0.0 > AT5G04830.1 | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr5:1402045-1403845 REVERSE LENGTH=960 Length=960 Score = 972 bits (526), Expect = 0.0 Identities = 652/710 (92%), Gaps = 20/710 (3%) Strand=Plus/Plus Query 164 CAGCGATGGATCC-GTCACGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAAT 222 ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| Sbjct 170 CAGCGATGGATCCAG-CGCGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAA- 227 Query 223 C-AGCGATTTGCTGATAATATCATGCCTCATCTTCTCAACTTGTACGGGTCTTGTGCAAA 281 | |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 228 CAAGCGATTTGCTGATAAAATCATGCCTCATCTTCTCAACTTGTACGGGTCTAGTGCAAA 287 Query 282 AGCCAACGACTTTGACATGTATGCACCAAATGCCTCGTTTGAAGACCCTTTGACGCATGC 341 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 288 AGCCAACGATTTTGACATGTATGCACCAAATGCTTCATTTGAAGACCCTTTGACGCATGC 347 Query 342 TCAGGGAGTGAAGCAAATCAAATCAGCATTTTATTCACTCGCTAAGGTGTTTGGTGAGTC 401 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 348 TCAGGGAGTGAAGCAGATCAAATCAGCATTTTATTCACTCCCTAAGGTGTTTGGTGAGTC 407 Query 402 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAATCTCGCCTGGGAAGAAAGAGATACT 461 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 408 GAAAATAGTTGAATATCATATTCAAGAAAGTGAAACCTCGCCGGGGAAGAAAGAGATACT 467 Query 462 AATTGACAACAAACAACATTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 521 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 468 AATTGACAACAAACAACACTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCAT 527 Query 522 CAAACTCTATGTCGAGAACGGGAAGATTGTCCGTCACGAAGACTGGTGGGACAAGAAACC 581 || |||||||||||| |||||||||| || || || ||||||||||||||||||||||| Sbjct 528 TAAGCTCTATGTCGAGGACGGGAAGATCGTTCGACATGAAGACTGGTGGGACAAGAAACC 587 Query 582 TCTGAGGAACAGAGACACGGTTAGCTTCCCGTTGGTCGGGCGGGTAATGGAGATGGGTCG 641 ||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct 588 TCTGAGGAACAGAGACACGGTTAGCTTTCCATTAGTCGGACGGGTAATGGAGATGGGTCG 647 Query 642 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCACA 701 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 648 AAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCCCA 707 Query 702 ATGAGCAAA-GGAAATACGCAACAAAACACACCGCATATTCTAGTGC-CTAGATTTCT-C 758 |||| |||| ||||| | | |||||||||| ||| || ||||| | || ||||| | Sbjct 708 ATGAACAAATGGAAA-AT--A-CAAAACACACATCATGTTATAGTGTTC-AG-TTTCTTC 761 Query 759 AAAACAGTACTTGAATTTGAGGAACTCCTTAAATCCG-TTTGGTTTCGAATTTAGTTTAA 817 |||||| ||||||||||| || |||||||| |||| | |||||||||||||||||||||| Sbjct 762 AAAACACTACTTGAATTTAAGAAACTCCTTTAATC-GATTTGGTTTCGAATTTAGTTTAA 820 Query 818 AAATCTGTAATA---T--GTTAATCTTCAGTTGGATTTTAGTCTGGTACG 862 |||| ||||||| | ||||||| || ||||| ||||||||||||||| Sbjct 821 AAATATGTAATACAGTATGTTAATCGTCTGTTGGTTTTTAGTCTGGTACG 870 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45009795712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5