BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487276
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04900.1 | Symbols: NOL | NYC1-like | chr5:1434774-1437330 F... 1838 0.0
> AT5G04900.1 | Symbols: NOL | NYC1-like | chr5:1434774-1437330
FORWARD LENGTH=1235
Length=1235
Score = 1838 bits (995), Expect = 0.0
Identities = 1092/1138 (96%), Gaps = 10/1138 (1%)
Strand=Plus/Plus
Query 1 TCTGTAATGGCTACTTCGAGTGGTTTCAGTGTCTCTTCTTCTCCGTTGCTTAGGCTTCGG 60
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 47 TCTGTAATGGCTACTTGGAGTGGTTTCAACGTCTCTTCTTCTCCGTTGCTTAGGCTTCGG 106
Query 61 TCTTCCTCCGTCACAAATGTCACTCAA-CTTCCATTTCTCTCTCCTCTTTGCCGGCGTCG 119
|||||||||||| ||||||||||| || ||||| |||||||||||| |||||||||||||
Sbjct 107 TCTTCCTCCGTCTCAAATGTCACT-AAGCTTCCGTTTCTCTCTCCTATTTGCCGGCGTCG 165
Query 120 GTTACTGGAAGAACGCTTCGGTCTCGCAACTATCGTTGTTACGCGCCAAAACCTCTCGGT 179
|||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 166 GTTACTGGCAGAACGCTTTGGTCTCGCAACTGTCGTTGTTACGCGCCAAAACCTCACGGT 225
Query 180 TACTCCGCCGTCTGCGGCGGTGGAAGCTCGTATCCCAGGGAAAAGAGAACCTATGACGCC 239
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 226 TACTCCGTCGTCTGCGGCGGTGGAAGCTCGTATCTCAGGGAAAAGAGAACCTATGACGCC 285
Query 240 TCCGTATAACGTCTTGATCACTGGCTCAACCAAAGGTTTCATAGGATATGCATTAGCTAG 299
|||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 286 TCCGTATAACATATTGATCACTGGCTCAACCAAAGG--T-ATAGGATATGCATTAGCTAG 342
Query 300 AGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 AGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGA 402
Query 360 GTCTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGA 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GACTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGA 462
Query 420 TGTTAGGGAAGGGAAGGATGTGAGGGAACTCGTAGCTTATAGTCAGAAGAATCTTAAATA 479
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 463 TGTTACGGAAGGGAAGGATGTGAGGGAACTTGTAGCTTATAGTCAGAAGAATCTTAAATA 522
Query 480 CATTGACATTTGGATAAATAATGCGGGATCTAATGCATACAGCTTTAAACCTTTGGCAGA 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 523 CATTGACATTTGGATAAATAATGCGGGATCTAATGCATATAGCTTTAAACCTTTGGCAGA 582
Query 540 GGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTTGGTCTCATGTTATG 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 GGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTAGGTCTCATGTTATG 642
Query 600 TTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATAT 702
Query 660 TGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAA 762
Query 720 ACGGAGTGTTGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ACGGAGTGTCGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAA 822
Query 780 AAATGTCGTGGTGCACAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGG 839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AAATGTCGTGGTGCATAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGG 882
Query 840 AGCAACAACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCTGAAGTGGT 899
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 883 AGCAACTACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCCGAAGTGGT 942
Query 900 AGCTGAGTACCTTGTCCCGAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGAC 959
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GGCTGAGTACCTTGTCCCAAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGAC 1002
Query 960 TTACATTCGTTTCCTAACCGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCATT 1019
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1003 TTACATCCGTTTCCTAACTGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCGTT 1062
Query 1020 GGGAGCGAGGAAGAACAGGTATGTTACTGAAGAGTAGGTGTCGTCAAAATAAGGATTAGA 1079
|||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1063 GGGAGCAAGGAAGAACAGGTATGTTACTGAAGAGTAGGTGTC---AAACTAAGTATTAGA 1119
Query 1080 ATTGTATTTG-TTTCAGTGTTTGTTCAATGGTTAATAAAAACCTCTACATCTTGTTCA 1136
|||||||| | |||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1120 ATTGTATT-GCTTTCTCAGTTTGTTCAATGGTAAATAAAAACCTCTACATTTTGTTCA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5