BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487281
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04940.1 | Symbols: SUVH1 | SU(VAR)3-9 homolog 1 | chr5:1454... 3097 0.0
> AT5G04940.1 | Symbols: SUVH1 | SU(VAR)3-9 homolog 1 | chr5:1454167-1456990
REVERSE LENGTH=2824
Length=2824
Score = 3097 bits (1677), Expect = 0.0
Identities = 1947/2073 (94%), Gaps = 36/2073 (2%)
Strand=Plus/Plus
Query 284 ATGGAAGGGAATGGTGGTAACTACACTGATAAGACGAGAGTGTTGGATATTAAGCCATTG 343
|||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 363 ATGGAAAGAAATGGTGGTCACTACACTGATAAGACGAGAGTGTTGGATATTAAACCATTG 422
Query 344 CGTACTCTAAGACCCGTGTTTCCCAGTGGAAATCAAGCTCCGCCTTTTGTCTGTGCACCT 403
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 423 CGTACTCTAAGACCTGTGTTTCCCAGTGGAAATCAAGCTCCGCCTTTTGTGTGTGCTCCT 482
Query 404 CCTTTTGGACCATTTCCTCCTGGGTTCTCATCGTTTTATCCGTTTAGTTCGTCTCAAGCG 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CCTTTTGGACCATTTCCTCCTGGGTTCTCATCGTTTTATCCGTTTAGTTCGTCTCAAGCG 542
Query 464 AGT---CA-ACA-C--A-C---ACC-AGATC--T-T--------A-ATCA--AG-CTCAG 496
| | || ||| | | | ||| || || | | | |||| || |||||
Sbjct 543 AATCAGCACACACCAGATCTTAACCAAGCTCAGTATCCACCGCAACATCAGCAGCCTCAG 602
Query 497 TATCCA-CA---GCA-A-CATCAGCAG---CCGCAGAATGCATCTGAGCCTTCTTTGGTT 547
||||| || | | | || |||||| || ||| |||||||||||||||| ||||||
Sbjct 603 AATCCACCACCGGTATATCAGCAGCAGCCTCCTCAGCATGCATCTGAGCCTTCGTTGGTT 662
Query 548 ACTCCTTTAAGGTCTTTTAGATCTCCTGATGCGTCTAATGGCAACACGGAGCTTGAGGGG 607
|||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||
Sbjct 663 ACTCCTTTAAGGTCATTTAGATCTCCTGATGTGTCTAATGGCAACGCGGAACTTGAGGGG 722
Query 608 TCAACTGTGAAAAGAAAGATCCCTAAAAGGCGTCCTATTGCTCGGCCTGAGAATATGAAT 667
|||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 723 TCAACTGTGAAAAGAAGGATCCCTAAAAAGCGTCCCATTTCTCGGCCTGAGAATATGAAT 782
Query 668 TTCGAGAGTGGGATTAACGTGGCTGAAAGAGAGAATGGCAATAGGGAGTTGGTGGTGAGT 727
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 783 TTCGAGAGTGGGATTAATGTGGCTGATAGAGAGAATGGCAATAGGGAGTTGGTGTTGAGT 842
Query 728 GTTCTTATGCGGTTTGATGCGTTAAGAAGAAGGTTTGCACAACTTGAGGATGCAAAGGAA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 843 GTTCTTATGCGGTTTGATGCGTTAAGAAGAAGGTTTGCACAACTTGAGGATGCTAAGGAA 902
Query 788 GCAGTTAGTGGGATTATCAAACGCCCTGATTTGAAAGCAGGATCTACTTGTATGGGCAGA 847
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 903 GCAGTTAGTGGGATTATCAAACGCCCTGATTTGAAATCAGGATCTACTTGTATGGGCAGA 962
Query 848 GGGGTCCGGACAAACACCaaaaaaaGACCTGGTATTGTTGCTGGCGTTGAGATCGGGGAC 907
||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 963 GGGGTGCGGACAAACACCAAAAAAAGACCTGGTATTGTTCCTGGTGTTGAGATTGGGGAC 1022
Query 908 GTATTCTTCTTCAGGTTTGAGATGTGTTTGGTGGGTTTGCATTCTCCATCAATGGCCGGG 967
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1023 GTATTCTTCTTCAGGTTTGAGATGTGTTTGGTGGGGTTGCATTCTCCATCAATGGCTGGG 1082
Query 968 ATTGACTATTTGGTTGTCAAGGGAGAAACGGAGGAAGAACCTATCGCCACTAGCATTGTG 1027
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1083 ATTGACTATCTGGTTGTCAAGGGAGAAACGGAAGAAGAACCTATCGCCACTAGCATTGTC 1142
Query 1028 TCATCTGGATATTATGATAATGACGAAGGTAATCCCGATGTTTTGATTTATACTGGTCAG 1087
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1143 TCATCTGGATATTATGATAATGACGAAGGTAATCCTGATGTTTTGATTTATACTGGTCAG 1202
Query 1088 GGTGGTAATGCTGATAAAGATAAGCAATCATCCGACCAAAAGCTCGAAAGGGGTAATCTT 1147
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1203 GGTGGTAATGCTGATAAAGATAAGCAATCTTCTGACCAAAAGCTCGAAAGGGGTAATCTT 1262
Query 1148 GCCTTGGAGAAGAGCTTGCGTAGAAATAGTGCAGTTAGGGTAATAAGAGGCTTGAAAGAG 1207
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1263 GCCTTGGAGAAGAGCTTGCGTAGAGATAGTGCAGTTAGGGTAATAAGGGGCTTGAAAGAG 1322
Query 1208 GCTTCTCATAATGCTAAGATCTATATTTATGATGGACTCTATGAGATTAAAGAGTCATGG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GCTTCTCATAATGCTAAGATCTATATTTATGATGGACTCTATGAGATTAAAGAGTCATGG 1382
Query 1268 GTAGAGAAAGGAAAGTCGGGACACAACACCTTCAAGTATAAACTGGTTAGAGCTCCTGGT 1327
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1383 GTAGAGAAAGGAAAATCTGGACACAACACCTTCAAGTATAAACTAGTTAGAGCTCCTGGT 1442
Query 1328 CAACCTCCTGCATTTGCTACATGGACTGCAATCCAGAAATGGAAGACGGGTTTGCCTTCA 1387
||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1443 CAACCGCCTGCATTTGCTTCATGGACTGCAATCCAGAAATGGAAGACGGGTGTGCCTTCA 1502
Query 1388 AGGCAAGGACTTATTCTCCCCGATATGACTTCTGGGGTTGAAAGTATACCTGTTTCACTT 1447
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1503 AGGCAAGGACTCATTCTTCCCGATATGACTTCCGGGGTTGAAAGCATACCTGTTTCACTT 1562
Query 1448 GTTAACGAAGTTGATACCGACAATGGGCCTGCTTATTTCACCTACTCCACAACGGTTAAA 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1563 GTTAACGAAGTTGATACCGACAATGGGCCTGCTTATTTCACCTACTCCACAACTGTGAAA 1622
Query 1508 TACTCAGAGTCGTTTAAGCTGACACAGCCTTCTTTTGGATGTGATTGTGCCAACTCATGC 1567
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1623 TACTCAGAGTCGTTTAAGCTGATGCAGCCTTCTTTTGGATGTGATTGTGCCAACTTATGC 1682
Query 1568 AAACCAGGGAACTTGGACTGTCACTGCATAAGGAAAAATGGAGGTGATTTCCCCTACACC 1627
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1683 AAACCAGGGAACTTGGATTGTCACTGCATAAGGAAAAATGGAGGTGACTTCCCCTACACC 1742
Query 1628 GGTAATGGAGTTCTAGTTAGCCGCAAGCCTATGATATATGAATGCAGTCCATCTTGCCCG 1687
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1743 GGTAATGGAATTCTAGTTAGCCGAAAGCCTATGATATATGAATGCAGTCCATCTTGCCCG 1802
Query 1688 TGCTCGACTTGCAAAAACAAGGTGACTCAAATGGGAGTAAAAGTGAGGCTGGAAGTTTTC 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 TGCTCGACTTGCAAAAACAAGGTGACTCAAATGGGAGTAAAAGTGAGGCTGGAAGTTTTC 1862
Query 1748 AAGACAGCGAATAGAGGATGGGGCTTGCGCTCATGGGATGCTATTCGTGCTGGTTCGTTT 1807
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1863 AAGACAGCGAATAGAGGATGGGGATTGCGGTCATGGGATGCTATTCGTGCTGGTTCTTTT 1922
Query 1808 ATATGCATATATGCAGGTGAGGCCAAAGACAAATCGAAGGTGCAGCAAACTATGGCTGAT 1867
||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1923 ATATGTATCTATGTAGGTGAGGCCAAAGACAAATCAAAGGTGCAGCAAACTATGGCTAAT 1982
Query 1868 GATGATTATACTTTTGATACAACCCATGTCTATAACCCTTTCAAGTGGAACTATGAGCCT 1927
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||
Sbjct 1983 GATGATTATACTTTTGATACAACCAATGTGTATAACCCTTTCAAGTGGAACTACGAACCT 2042
Query 1928 GGCTTAGCAGACGAAGATGCTTCTGAAGAGATGTCTGAAGAATCTGAAATCCCGCTGCCA 1987
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2043 GGCTTAGCAGACGAAGATGCTTGTGAAGAGATGTCTGAAGAATCTGAAATCCCGCTGCCA 2102
Query 1988 CTGATAATCAGTGCTAAGAATGTTGGGAACGTTGCCCGATTCATGAATCATAGTTGCTCG 2047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 CTGATAATCAGTGCTAAGAATGTTGGGAACGTTGCCCGATTCATGAATCATAGTTGCTCA 2162
Query 2048 CCTAATGTTTTCTGGCAGCCGGTCACTTATGAAAATAACAGTCAACTCTTCGTGCATGTC 2107
||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 2163 CCTAATGTTTTCTGGCAGCCGGTTAGTTATGAAAATAACAGTCAACTCTTTGTGCATGTG 2222
Query 2108 GCCTTCTTTGCCATTGCTCACATCCCTCCAATGACTGAGTTAACTTACGACTATGGAGTA 2167
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 GCCTTCTTTGCCATTTCTCACATCCCTCCAATGACTGAGTTAACTTACGACTATGGAGTA 2282
Query 2168 TCTAGACCAAGTGGGACTGAAAATGGCAATCCTTTATATGGCAAAAAGAAATGCTTTTGT 2227
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 2283 TCTAGACCAAGTGGGACTCAAAATGGCAATCCTTTATATGGCAAAAGGAAATGCTTCTGT 2342
Query 2228 GGATCAGCGTATTGCCGTGGCTCATTTGGATGATGATGGGGAGAAAAGTGATCTCTGCTG 2287
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||
Sbjct 2343 GGATCAGCGTATTGCCGTGGCTCATTTGGATGATGATGGAGAGAAAGGCGATCTCTGGTG 2402
Query 2288 AACAACTGGAGTCTGACGATTTTGGTAGCAAAA 2320
||||||||||||| || ||||||||| ||||||
Sbjct 2403 AACAACTGGAGTCGGATGATTTTGGTTGCAAAA 2435
Score = 383 bits (207), Expect = 5e-105
Identities = 247/266 (93%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 2321 GGCAGGTGGAGTGTTGAGTCCTGATCTGTGGAATCGAGTACTTTTGGTAGCAACTAAAGT 2380
||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 2517 GGCAGCTGGAGTGTTGAGTCCTGATAGGTGGAACCGAGTACTTTTGGTAGCAAGTAAAGT 2576
Query 2381 AAGTCTCTTTGATCTTCTCTTCAACAGCATAAGACGCAAAGCTGTGAAGGATTTTTA--C 2438
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2577 AAGTCTCTTTGATCTTCTCTTCAAGAGCATAAGACGCAAAGCTGTGAAGGATTTTTATAC 2636
Query 2439 TGCTTCTCCAGCAGAAACCTTATCTATTTCTCGGATTGTGGAAGATGTCCTCATGTTTTT 2498
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 2637 TGCTTCTCCAGCAAAAACCTTATCTATTTATCGGATTGTGGAAGATGTCCTCATGCTTTT 2696
Query 2499 CTCCTTTTGGATATGTAATCATATTAGTCAGTGTTCGGATCGGTTTT-AGGACAAATCTC 2557
|||| |||||||||||||| ||||||||||| ||| ||||| |||| ||||||||||||
Sbjct 2697 ATCCTGTTGGATATGTAATCTTATTAGTCAGTATTCAGATCGATTTTTAGGACAAATCTC 2756
Query 2558 TGGAAACTCTA-GCCTCTTTTGATTA 2582
||||||||||| ||||||||||||||
Sbjct 2757 TGGAAACTCTAAGCCTCTTTTGATTA 2782
Score = 348 bits (188), Expect = 2e-94
Identities = 261/292 (89%), Gaps = 21/292 (7%)
Strand=Plus/Plus
Query 1 TTTGTTTCCctctctttctctgtgtctctctctTTTCGGAAACCCTAATTTCGCGAGC-- 58
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 27 TTTGTTTCCCTCTCTTTCTCTCTGTCTCTCTCTTTTCGGAAACCCT-ATTTCGCGAGCAA 85
Query 59 -CAGCTTGAAAAGGGTGTGTG-GTGTGATCTATCCAAAAGCGCATTTTCAGG-TT-TAAT 114
|||||||||||||||||||| ||||||||||||||||||| ||||||||| || | |
Sbjct 86 GCAGCTTGAAAAGGGTGTGTGAATGTGATCTATCCAAAAGCGTATTTTCAGGTTTCTTCT 145
Query 115 TTGTGAAAGTTTTAAGCTTTTTGCTTTGTTTATTGTAATCTCTGAATCTGCGA-TGATGG 173
|| ||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 146 TTCTGAAAGTTTTAAGCTTTTTGCTTTGTT-ATTGTAATCTCTGAATCTG-GAATGATGG 203
Query 174 TTGTTTCTCTGTGCATGCAATTGGCTTTTTGAGGATCTCTGATTCGTTGTTGGGTTTATT 233
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 204 TTGTTTCTCTGTGCATGCAATTGGCCTTTTGAGGATCTCTGATTCGTAGTTGTGTTTA-- 261
Query 234 TGTGAAGAAAAAGTTGGGACTTTTTACTTT-CCCAGATCTTTGATAGCTTAA 284
| || || || || |||||||||||| |||||||||||||||||||||
Sbjct 262 -G--AA-AAG--GT-GG-ACTTTTTACTTTACCCAGATCTTTGATAGCTTAA 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129480879883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5