BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487303
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05140.1 | Symbols: | Transcription elongation factor (TFII... 2634 0.0
> AT5G05140.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr5:1519913-1522667 FORWARD LENGTH=2121
Length=2121
Score = 2634 bits (1426), Expect = 0.0
Identities = 1592/1670 (95%), Gaps = 19/1670 (1%)
Strand=Plus/Plus
Query 329 ACGATGAAAGCATCAGGTTCGTTAGATAGCTGGAGAGAATATTT-C--CGGCGAGGAGAT 385
|||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||
Sbjct 438 ACGATGAAAGCATCGGGTTCATTAGATAGCTGGAGAGAATATTTCCGACGGCGAGGAGAT 497
Query 386 TCCGATATTTTCGGGATCATCGATCATGCGATCATGGTGGCTGCTACTGATTGTCCTAAC 445
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCCGATATATTCGGGATCATCGATCATGCGATCATGGTGGCTGCTACTGATTGTCCTAAC 557
Query 446 AAATTCAAATCCAGAAGAGACAAAATCGCCGAGCTTTTATTCTCCTGCAGAGTGAGCCGC 505
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 558 AAATTCAAATCCAGAAGAGACAAAATCGCCGAGCTTTTATTCTCCTGTAGAGTGAATCGT 617
Query 506 TGCATCGGATGCGACCATCTCGAATTGTCTGTTCCCGGAGACGACGAGGGTAATCGCGGC 565
||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 618 TGCGTCGGATGCGACCATCTTGAATTGTCTGTTCCCGGAGACGACGAGGCTAA------C 671
Query 566 CGTGGAGCCACCGGTGACGGCGGTGGTGGTACGGCGGTTGATGAAGATTATGAGG-T--T 622
|||||| ||||||| | || |||||||||||||||||||||||||||||||||| | |
Sbjct 672 CGTGGAACCACCGGAAATGGTGGTGGTGGTACGGCGGTTGATGAAGATTATGAGGTTGCT 731
Query 623 GGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGCAGAGGAGATAGTAATCAGATTGTTAGC 682
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 732 GGTGGTAGTAAAGAGAGCAAAGCTAATAGTAGCAGAGGGGATAATAATCAGATTGTTAGC 791
Query 683 AATTATACATTTGATGAAGCTGAGGCTTTGAGTGATGAGATTGAAGAGTTTTCTGTGGTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AATTATACATTTGATGAAGCTGAGGCTTTGAGTGATGAGATTGAAGAGTTTTCTGTGGTT 851
Query 743 TCTAAGGAGGTTGCTAGGATCAAAGAGATCTTGCTCAACAAAGAAGATGAGCCAAACTCG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TCTAAGGAGGTTGCTAGGATCAAAGAGATCTTGCTCAACAAAGAAGATGAGCCAAACTCG 911
Query 803 GTGTTACTCGATTCTTTAAGACATCTTAAGTTGATGTCTTTGAATGTGGATATTCTTAAG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GTGTTACTCGATTCTTTAAGACATCTTAAGTTGATGTCTTTGAATGTGGATATTCTTAAG 971
Query 863 AGTACTGAGATTGGAAAGGCTGTTAATGGCCTGAGGAAACATGGTTCTGATAAGATTCGA 922
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 972 AGTACTGAGATTGGAAAGGCTGTTAATGGCCTCAGGAAACATTCTTCTGATAAGATTCGA 1031
Query 923 CAACTCGCAAAGACTCTTATCGCAGAGTGGAAGGAGTTGGTGGACCAATGGGTGAATACC 982
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1032 CAACTCGCTAAGACTCTTATCGCAGAATGGAAGGAGTTGGTGGATCAATGGGTGAATACC 1091
Query 983 ACAAAGGAAATTACTGGTGCTGAAGGTACACCAGAGTCTGCAAACCCGTCTGTCGTTGAT 1042
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1092 ACAAAGGAAATCACTGGTGCTGAAGGTACACCAGAGTCTGCAAACCCGTCTGTCCTTGAT 1151
Query 1043 GAAGAAGAGGCGTTTCCATCGCTTCCATATGATGTTGACATCTTTACACCGGAACCAAAC 1102
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1152 GAAGAAGAGGCGTTTCCATCGCTTCCATATGATGTTGATATCTTTACACCTGAACCAAAC 1211
Query 1103 GGATTTGAAATCTCACACTTCTTTGATTCCTTGGACTTTGATGGAAATCCTCGTAATTCT 1162
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1212 GGATTTGAAATCTCACACTTCTTTGATTCCTTGGACTTTGATGGAAATCCTCGTAACTCT 1271
Query 1163 AAAGAATACAACACAAGCCGAGAGCACGAAAGAAGACCACAAAATATCGCCAAGAGAAGA 1222
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct 1272 GAAGAACACAACACAAGCCGAGAGCATGAAAGAAGGCCACAAAATATCGCCAAGAGAAAA 1331
Query 1223 CCAGAGGGAACACAAATGAGGATACAAGATGCTCCTTTTAGATCTATTAAGCCATCATCA 1282
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 CCTGAGGGAACACAAATGAGGATACAAGATGCTCCTTTTAGATCTATTAAGCCATCATCA 1391
Query 1283 GATGCTGATTTTGATGGCACTAGAAGACCTCTAAAGCAAAATACAGAGCAAAGGATGAAG 1342
| | ||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1392 GCTACTGATTTTGATGGGACTAGAAGACCTGTAAAGCAAAGTACAGAGCAAAGGATGAAG 1451
Query 1343 AACGAAACGGTATCAGTTCTCAAGTCTGAAAAACCCATGATCCAAAGGAAACCGGTTGTT 1402
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 AACGAAACGGTATCTGTTCACAAGTCTGAAAAACCCATGATCCAAAGGAAACCGGTTGTT 1511
Query 1403 ACAGAACAGAAGCGGAAAGCTCCCGGACCTCAACAAGAAAAACTTAAAGGTCTTGATGCA 1462
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1512 ACAGAACAGAAGCGGAAAGCTCCTGGACCTCAACAAGAAAAACTTAAAGGTCTTGATGCA 1571
Query 1463 GACGCAAAGTTTGAGTTTGCAAAGAGGAAACTTCAAGAGAGCTACCAGCATCATGAGAAT 1522
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1572 GACGCAAAGTTTGAGTTTGCAAAGAGGAAACTTCAAGAAAGCTACCAGCATCACGAGAAT 1631
Query 1523 GCCAAGAAGCAGCGGACGATACAAGTACTTGAGATGATCCCAAAGCAAGGTAGTGCTCAG 1582
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 GCCAAGAAGCAGCGAACGATACAAGTACTTGAGATGATCCCAAAGCAAGGTAGTGCTCAG 1691
Query 1583 AAACCGCAACTCAAGAGACCTGGAATGAGCAACAGGAATTGGGCTAACGGGCGAAAATAG 1642
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1692 AAACCGCAACTCAAGAGACCTGGAATGAGCAACAGGAATTGGGCTAATGGGAGAAAATAG 1751
Query 1643 CTTCTTCTCTGT-CAAAATGGTGAATAACTCTCGGCAAAAGTCATTTTACTCCATACTTA 1701
|||| || ||| |||| |||||||||| |||||||||||| || ||||||||||||||
Sbjct 1752 TTTCTGCTTTGTTCAAA-TGGTGAATAATTCTCGGCAAAAG--ATATTACTCCATACTTA 1808
Query 1702 CCACACATATCTCGCAATCTCTGGTGCAATAAAAGGTAAACAGAGTCTAGTTCCACAA-G 1760
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1809 CCACACATATCTCGCAATCTCTGGTGCAATAAA-GGTAAACAGAGTCTAGTTCCACAAAG 1867
Query 1761 CTGGATACAGTAACAAGCAGAGGAGAAGGAACAGAATCCAACATAACTTTACTTTGAACA 1820
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1868 CTGGAGACAGAAACAAGCAGAGGAGAAGGAACAGAATCCAACATAACTTTACTTTGAACA 1927
Query 1821 AACTGTTTTCTCCTCTGTTTTGTTCAGTCTTGGATTCACCAATTGCAGCAAGATAGGGAT 1880
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1928 AACTGTTTACTCCTCTGTTTTGTTCTGTCTTGGATTCACCAATTGCAGCAAGATAGGGAT 1987
Query 1881 CCCAATTATTGTTTCTTTTATGTGTTCTT-ACTACATTCTTGAGACTTTCGGTACAGTGT 1939
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1988 ACCAATTATTGTTTCTTTTATGTGTTCTTTACTACATTCTTGAGACTTTCGGTACAGTCC 2047
Query 1940 CGGTTTAGTCGGGTTATGTTCGGTTTTGGGACAAGGAGAGAGGTCCCTTT 1989
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 CGGTTTAGTCGGGTTATGTTCGGTTTTGGGACAAGGAGAGAGGTCCCTTT 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98543669835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5