BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487319
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05270.1 | Symbols: | Chalcone-flavanone isomerase family p... 1249 0.0
> AT5G05270.1 | Symbols: | Chalcone-flavanone isomerase family
protein | chr5:1563320-1565007 FORWARD LENGTH=982
Length=982
Score = 1249 bits (676), Expect = 0.0
Identities = 777/824 (94%), Gaps = 13/824 (2%)
Strand=Plus/Plus
Query 1 GCTTTGAACGTTAGC--AA-TATGTTACCTACCACCAGTCCCTGGCTTA--ATAT----A 51
||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
Sbjct 3 GCTTTGAACGTTAGCAAAATTATGTTACCTACCACCAGTCCCTGGCTTATTATATAGAGA 62
Query 52 TAGATATTCACATTTAC-ATCATAGATATTCTTTCTCTATGATCATAAAATAGTACACCA 110
|||||||||||||||| || | |||||| |||||||| |||| |||||||||||||||
Sbjct 63 GAGATATTCACATTTACAAT-TTCGATATTGTTTCTCTAAGATCGTAAAATAGTACACCA 121
Query 111 AGCCGTTTATAAATTCCTTCACTCTCAGTTTC-AAGTAAATATAAATTAGAAATGGGAAC 169
|||| |||||||||| |||||||||||| ||| || | ||||||||||||||||||||||
Sbjct 122 AGCCATTTATAAATTTCTTCACTCTCAGATTCAAAAT-AATATAAATTAGAAATGGGAAC 180
Query 170 AGAGATGGTCATGGTTCACGATGTTCCTTTTCCTCCACAGATCATCACTTCCAAGCCACT 229
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGAGATGGTCATGGTTCACGAGGTTCCTTTTCCTCCACAGATCATCACTTCCAAGCCACT 240
Query 230 CTCTCTTCTGGGCCAAGGGATCACAGACATCGAGATCCACTTTCTTCAAGTAAAGTTCAC 289
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 CTCTCTTCTGGGCCAAGGGATCACAGACATTGAGATCCACTTTCTTCAAGTGAAGTTCAC 300
Query 290 GGCGATCGGAGTTTACTTGGATCCTTTAGATGTTAAAACCCATCTTGATAACTGGAAAGG 349
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 301 TGCGATCGGAGTTTACTTAGATCCTTCAGATGTTAAAACACATCTTGATAACTGGAAAGG 360
Query 350 CAAAACCGGACAAGAACTCGCCGGCGATGATGACTTCTTCGACGCCCTTGCCTCCGCGGA 409
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAAACCGGAAAAGAACTCGCCGGCGATGATGACTTCTTCGACGCCCTTGCCTCCGCGGA 420
Query 410 GATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAAATAAAAGGAGCTCAATACGGAGT 469
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 421 GATGGAGAAGGTTATAAGAGTGGTGGTGATAAAGGAGATAAAAGGAGCTCAGTACGGAGT 480
Query 470 GCAGCTAGAGAATTCTGTGAGAGATCGTTTGGCTGAGGAGGATAAGTACGAGGAAGAAGA 529
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCAGCTAGAGAATACGGTGAGAGATCGTTTGGCTGAGGAGGATAAGTACGAGGAAGAAGA 540
Query 530 AGAAACCGAGCTCGAGAAGGTCGTTGGCTTTTTCCAGTCTAAGTACTTCAAAGCTAATTC 589
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 541 AGAAACTGAGCTCGAGAAGGTCGTTGGCTTTTTCCAGTCCAAGTACTTCAAAGCTAACTC 600
Query 590 CATCATCACTTACCATTTCTCAGCCAAAGATGGCATTTGCGAGATCGGGTTTGAGACGGA 649
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGTTATCACTTACCATTTCTCAGCCAAAGATGGCATTTGCGAGATCGGGTTTGAGACGGA 660
Query 650 AGGTAAAGAGGAGGAGAAACTGAAGGTGGAGAATGCGAATGTGGTGGGGATGATGCAGAG 709
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 AGGTAAAGAAGAGGAGAAACTGAAGGTGGAGAATGCGAATGTGGTGGGAATGATGCAGAG 720
Query 710 ATGGTATTTGTCCGGAAGTCGAGGAGTCTCACCGTCGACTATTGTCTCCATCGCTGATTC 769
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGGTATTTGTCCGGAAGTCGTGGAGTCTCACCGTCGACTATTGTCTCCATCGCTGATTC 780
Query 770 GATCTCTGCAGTTTTAACATAAGAACCTTGGCCCCTTACATAAA 813
||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 781 AATCTCCGCAGTTTTAACCTAAGAACCATGGCCCCTTACATAAA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5