BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487321
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05282.1 | Symbols: CPuORF64 | conserved peptide upstream op... 1315 0.0
AT5G05280.1 | Symbols: | RING/U-box superfamily protein | chr5... 1315 0.0
> AT5G05282.1 | Symbols: CPuORF64 | conserved peptide upstream
open reading frame 64 | chr5:1565447-1566391 REVERSE LENGTH=945
Length=945
Score = 1315 bits (712), Expect = 0.0
Identities = 871/941 (93%), Gaps = 37/941 (4%)
Strand=Plus/Plus
Query 1 ATTTCCTACTCTTATAGAACAACTTATTTCCTTTTGTGTAAAACTCAAATAAGAACTTGT 60
||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||
Sbjct 14 ATTTCCTACTCTTATAGTACAACTTATTTCCTTATGTGTAAAACCCAAAGAAGAACTTGT 73
Query 61 ATAAAGAAACAGATCATTAAGGATTTGAGATTTGA--TATCTCCATGGATTTATCAAGTC 118
||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||
Sbjct 74 ATAAAGAAACAGATCATAAAGGATTTGAGCTTTGATTTTTCTCCATGGATTTATCAAGTC 133
Query 119 TTTGAGTTTCAGACTGGAATCGAAGCCTCAGAGTAAAAGAGAAAACAAAAGCTGA-TCTT 177
||||||||||||||||||| | ||||||| |||||||||||| ||||||||| | ||||
Sbjct 134 TTTGAGTTTCAGACTGGAAACTAAGCCTCGGAGTAAAAGAGAGAACAAAAGC--ACTCTT 191
Query 178 GTGCTTATCATAGCATGAAGAAACTTGAATCTCTCATCTCAGTCTCTTTTGTAGTCCGAT 237
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 192 GTGCTTATCATAGCATGAAGAAACTTGACTCTTTCATCTCAGTCTCTTTCGTAGTCCGAT 251
Query 238 TCGAACATAAACCAGAGCAAT---------aagaagaagaa----g-a----ag-----a 274
||||||| |||| ||||||| ||||||||||| | | || |
Sbjct 252 TCGAACAGAAACTGGAGCAATAAGAAAAAGAAGAAGAAGAACCTTGAAGGTGAGTTAAAA 311
Query 275 aaaaaa-aaGATTTGTGCATCTGTTTCT-AAAGCGTTTACAGATGGCTAGATTCTTACTT 332
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 312 AAAAAAGAAGATTTGTGCATCTGTTTCTGAAA-CGTTTACAGATGGCTAGATTTTTACTT 370
Query 333 GAGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 392
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 430
Query 393 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGGTACACACATGGTGATCGTACTAGCC 452
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 431 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGATACACACATGGTGATCATACTAGCC 490
Query 453 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 550
Query 513 GGCTGCACGAGAAGGTTCACTCCCGACGAAGATCCAGTTGACACTAACGCAAACGTAAAC 572
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 551 CGCTGCACGAGAAGGTTCACTCCCAACGAAGATCCAGTTGACACCAATGCAAACGTA--- 607
Query 573 GTAGCAAAGGGGATCAAGAAACGGGCGTTGAAGCTTATTCCGGTTGATTCATACAGTCTT 632
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 608 G---CAAAGGGGATCAAGAAACGGGCGTTGAAGGTTATTCCGGTTGATTCATACAGTCCT 664
Query 633 GAGCTTAAGATGAAAGCCACAGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 692
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAGCTTAAGATGAAAGCCACGGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 724
Query 693 ACAGTTAGGGTTTTGCCCAAATGTAGCCATGGCTTCCACGTCAAGTGCATCGACACTTGG 752
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 725 ACAGTTAGGGTTTTGCCCAAATGTAACCATGGCTTCCACGTCAAGTGCATCGACACTTGG 784
Query 753 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 844
Query 813 GCTAATGGCTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 872
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCAAATGGTTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 904
Query 873 TCAATGTTGAGTTTTTGCTTCACCTAAGTAGGtttttttCT 913
|||||||||||| ||||||||||||||||||||||| ||||
Sbjct 905 TCAATGTTGAGTGTTTGCTTCACCTAAGTAGGTTTTCTTCT 945
> AT5G05280.1 | Symbols: | RING/U-box superfamily protein | chr5:1565447-1566391
REVERSE LENGTH=945
Length=945
Score = 1315 bits (712), Expect = 0.0
Identities = 871/941 (93%), Gaps = 37/941 (4%)
Strand=Plus/Plus
Query 1 ATTTCCTACTCTTATAGAACAACTTATTTCCTTTTGTGTAAAACTCAAATAAGAACTTGT 60
||||||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||
Sbjct 14 ATTTCCTACTCTTATAGTACAACTTATTTCCTTATGTGTAAAACCCAAAGAAGAACTTGT 73
Query 61 ATAAAGAAACAGATCATTAAGGATTTGAGATTTGA--TATCTCCATGGATTTATCAAGTC 118
||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||||
Sbjct 74 ATAAAGAAACAGATCATAAAGGATTTGAGCTTTGATTTTTCTCCATGGATTTATCAAGTC 133
Query 119 TTTGAGTTTCAGACTGGAATCGAAGCCTCAGAGTAAAAGAGAAAACAAAAGCTGA-TCTT 177
||||||||||||||||||| | ||||||| |||||||||||| ||||||||| | ||||
Sbjct 134 TTTGAGTTTCAGACTGGAAACTAAGCCTCGGAGTAAAAGAGAGAACAAAAGC--ACTCTT 191
Query 178 GTGCTTATCATAGCATGAAGAAACTTGAATCTCTCATCTCAGTCTCTTTTGTAGTCCGAT 237
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 192 GTGCTTATCATAGCATGAAGAAACTTGACTCTTTCATCTCAGTCTCTTTCGTAGTCCGAT 251
Query 238 TCGAACATAAACCAGAGCAAT---------aagaagaagaa----g-a----ag-----a 274
||||||| |||| ||||||| ||||||||||| | | || |
Sbjct 252 TCGAACAGAAACTGGAGCAATAAGAAAAAGAAGAAGAAGAACCTTGAAGGTGAGTTAAAA 311
Query 275 aaaaaa-aaGATTTGTGCATCTGTTTCT-AAAGCGTTTACAGATGGCTAGATTCTTACTT 332
|||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 312 AAAAAAGAAGATTTGTGCATCTGTTTCTGAAA-CGTTTACAGATGGCTAGATTTTTACTT 370
Query 333 GAGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 392
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCGACGCAAGCTACCCCGACTATTTCAGCTACTGATGCAAATCCTAGAACCTTAGGAGAC 430
Query 393 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGGTACACACATGGTGATCGTACTAGCC 452
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 431 TCTGTCAGCAACAACAAGAATATAGCTAGCATGGATACACACATGGTGATCATACTAGCC 490
Query 453 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GCTCTTCTATGCGCCTTGATCTGTGCTCTTGGCATCAATTCGGTCTTGCGCTGTGTCTTA 550
Query 513 GGCTGCACGAGAAGGTTCACTCCCGACGAAGATCCAGTTGACACTAACGCAAACGTAAAC 572
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 551 CGCTGCACGAGAAGGTTCACTCCCAACGAAGATCCAGTTGACACCAATGCAAACGTA--- 607
Query 573 GTAGCAAAGGGGATCAAGAAACGGGCGTTGAAGCTTATTCCGGTTGATTCATACAGTCTT 632
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 608 G---CAAAGGGGATCAAGAAACGGGCGTTGAAGGTTATTCCGGTTGATTCATACAGTCCT 664
Query 633 GAGCTTAAGATGAAAGCCACAGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 692
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 665 GAGCTTAAGATGAAAGCCACGGAGTGTTTGATCTGTTTAGGAGATTTTGTTGAAGGAGAG 724
Query 693 ACAGTTAGGGTTTTGCCCAAATGTAGCCATGGCTTCCACGTCAAGTGCATCGACACTTGG 752
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 725 ACAGTTAGGGTTTTGCCCAAATGTAACCATGGCTTCCACGTCAAGTGCATCGACACTTGG 784
Query 753 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTGCTGTCACATTCCTCTTGCCCCACTTGCAGACAATCACTCCTCGAACATCAGACTCCA 844
Query 813 GCTAATGGCTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 872
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCAAATGGTTCCCGGCGGGGTGATGACGTGGCAACGTAACAGAGCTTCATGAGGTCACTT 904
Query 873 TCAATGTTGAGTTTTTGCTTCACCTAAGTAGGtttttttCT 913
|||||||||||| ||||||||||||||||||||||| ||||
Sbjct 905 TCAATGTTGAGTGTTTGCTTCACCTAAGTAGGTTTTCTTCT 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44607922536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5