BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487335
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05410.1 | Symbols: DREB2A, DREB2 | DRE-binding protein 2A |... 1956 0.0
> AT5G05410.1 | Symbols: DREB2A, DREB2 | DRE-binding protein 2A
| chr5:1602205-1603911 FORWARD LENGTH=1450
Length=1450
Score = 1956 bits (1059), Expect = 0.0
Identities = 1304/1419 (92%), Gaps = 29/1419 (2%)
Strand=Plus/Plus
Query 1 AGATATTTTGAGTTCTGCTAAAGCTGTCTGATaaaaagaagagaaaaactcgaaaaagct 60
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGATATTTTGATTTCTGCTAAAGCTGTCTGATAAAAAGAAGAGGAAAACTCGAAAAAGCT 60
Query 61 acacac---aagaagaagaaaagatacgcggaagaacactaaaTACGAAAGCGATTTATC 117
|||||| ||||||||||||||||||| | ||||| |||||| ||||||||||||||||
Sbjct 61 ACACACAAGAAGAAGAAGAAAAGATACGAGCAAGAAGACTAAACACGAAAGCGATTTATC 120
Query 118 TACTCGAAGGAAGAGACTTTGGTTTTCAAATTTCGTCCCCAATAGATTGTGTTGTTTCTG 177
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 121 AACTCGAAGGAAGAGACTTTGATTTTCAAATTTCGTCCCCTATAGATTGTGTTGTTTCTG 180
Query 178 GGAAGGAGATGGCAGTTTATGATCAGAGTGGAGATATAAAAAGAACCCAACTTGATACAT 237
|||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||
Sbjct 181 GGAAGGAGATGGCAGTTTATGATCAGAGTGGAGATAGAAACAGAACACAAATTGATACAT 240
Query 238 CGAGGAAAAGGAAATCTAGAAGTAGAGCTGATGGTACTACTGTGGCTGAGAGGTTGAAGA 297
||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct 241 CGAGGAAAAGGAAATCTAGAAGTAGAGGTGACGGTACTACTGTGGCTGAGAGATTAAAGA 300
Query 298 GATGGAAAGAGTACAATGAGAATGTTGAAGAAGTTTCTACCAAGAAAAGGAAAGTACCTG 357
||||||||||||| || |||| || |||||||||||||||||||| |||||||||||||
Sbjct 301 GATGGAAAGAGTATAACGAGACCGTAGAAGAAGTTTCTACCAAGAAGAGGAAAGTACCTG 360
Query 358 CCAAAGGGTCCAAGAAGGGTTGTATGAAAGGTAAAGGAGGGCCAGAGAACGGTCGATGTA 417
| |||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 361 CGAAAGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGACCAGAGAATAGCCGATGTA 420
Query 418 GTTTCAGAGGAGTTAGGCAGAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCCA 477
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 421 GTTTCAGAGGAGTTAGGCAAAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCTA 480
Query 478 ATCGAGGTAGTAGGCTTTGGCTTGGTACTTTCCCTACTGCTGAAGAAGCTGCTTCTGCTT 537
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATCGAGGTAGCAGGCTTTGGCTTGGTACTTTCCCTACTGCTCAAGAAGCTGCTTCTGCTT 540
Query 538 ATGATGAGGCGGCTAAAGCTATGTATGGTCCTTTGGCTCGTCTTAATTTCCCTCGGTCTG 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGATGAGGCTGCTAAAGCTATGTATGGTCCTTTGGCTCGTCTTAATTTCCCTCGGTCTG 600
Query 598 ATG-GCTCTGAGGTTACGAGTACGTCGAGTCAGTCTGAGGTGTGTACGGTTGAGACTCCT 656
||| | ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 601 ATGCG-TCTGAGGTTACGAGTACCTCAAGTCAGTCTGAGGTGTGTACTGTTGAGACTCCT 659
Query 657 GGTTGTGTTCATGTGAAAACAGAGGATGCAGATTGTGAATCTAAACCCTTGTTCTGTGAA 716
||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||| |
Sbjct 660 GGTTGTGTTCATGTGAAAACAGAGGATCCAGATTGTGAATCTAAACCCTTCTCCGGTGGA 719
Query 717 GCTA-AGCCCATGTATCGTCTGGAGAATGGTGCAGAAGAGATGAAGAG-GGCTGTTAAGG 774
| | |||| |||||| |||||||||||||||| |||||||||||||| || |||||| |
Sbjct 720 G-TGGAGCCGATGTATTGTCTGGAGAATGGTGCGGAAGAGATGAAGAGAGG-TGTTAAAG 777
Query 775 CGGATAAGGATTGGCTGAGTGAGTTTGAACATAACTATTGGAGGGATGTTCTGAAAGAGA 834
|||||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 778 CGGATAAGCATTGGCTGAGCGAGTTTGAACATAACTATTGGAGTGATATTCTGAAAGAGA 837
Query 835 AAGAGAAACAGAAGGAGCAAGAGATTGTAGAAACCTGTCAGCAACAGGAACAGCAGGATT 894
||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 838 AAGAGAAACAGAAGGAGCAAGGGATTGTAGAAACCTGTCAGCAACA--A-CAGCAGGATT 894
Query 895 CGCTATCTGTTACTGACTATGGTTGGCCCAATGATCTGGATCAGAGTCACTTGGATTCTT 954
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 895 CGCTATCTGTTGCAGACTATGGTTGGCCCAATGATGTGGATCAGAGTCACTTGGATTCTT 954
Query 955 CAGATATGTTTGATGTTGATGAGCTACTACGTGACATAAATGGCGACGACGTGTTTACAG 1014
|||| ||||||||||| |||||||| ||||||||| ||||||||||||| |||||| |||
Sbjct 955 CAGACATGTTTGATGTCGATGAGCTTCTACGTGACCTAAATGGCGACGATGTGTTTGCAG 1014
Query 1015 GCTTAAATCAGGACCAGTACCCGGGGAACAATTTTACCAACGGTTCATACAGGCCTGAGA 1074
||||||||||||||| |||||||||||||| | || ||||||||||||||||||| ||||
Sbjct 1015 GCTTAAATCAGGACCGGTACCCGGGGAACAGTGTTGCCAACGGTTCATACAGGCCCGAGA 1074
Query 1075 GTCAACAAGGCGGATTTGATCCGCTGCAAAGCCTCAACTACGGTTACGGATTACCTCCGT 1134
|||||||| | || ||||||||||| ||||||||||||||||| | || ||||||||
Sbjct 1075 GTCAACAAAGTGGTTTTGATCCGCTACAAAGCCTCAACTACGG--A---AT-ACCTCCGT 1128
Query 1135 TTCAGTTCCAGGCAAAGGATGGTAATGGAGTT-TTCGATGACTTGAGTTACTTGGATCTG 1193
||||| || ||| |||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1129 TTCAGCTCGAGGGAAAGGATGGTAATGGA-TTCTTCGACGACTTGAGTTACTTGGATCTG 1187
Query 1194 GAGAACTAAACTAGACAATATGAAGCTTTTCGGATTTGTTATTTGCCTTAATCCCACAAT 1253
||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1188 GAGAACTAAACAAAACAATATGAAGCTTTTTGGATTTGATATTTGCCTTAATCCCACAAC 1247
Query 1254 GACTGTTGATTCTCTATTTCTGAGTTTTAGTGATATAGAGAACTTCAGAACACttttttt 1313
||||||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||
Sbjct 1248 GACTGTTGATTCTCTATC-C-GAGTTTTAGTGATATAGAGAACTACAGAACACGTTTTTT 1305
Query 1314 ttttttGTTATAAAGGTGAAGTGTATATATATATCGAAACAGCAATATGACAATAGAGAA 1373
|| |||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 1306 CTT---GTTATAAAGGTGAACTGTATATAT----CGAAACAGTGATATGACAATAGAGAA 1358
Query 1374 GACAACTATAGTTTGTTAGTCTGCTTCTCTTAAGTTGTT 1412
|||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GACAACTATAGTTTGTTAGTCTGCTTCTCTTAAGTTGTT 1397
Score = 62.1 bits (33), Expect = 1e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1409 TGTTTTATGTTTTGTAACAACAGGAATGAATAA 1441
|||||||||||||||||||||||||||||||||
Sbjct 1407 TGTTTTATGTTTTGTAACAACAGGAATGAATAA 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71033771175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5