BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487375 Length=1797 Score E Sequences producing significant alignments: (Bits) Value AT5G05740.1 | Symbols: ATEGY2, EGY2 | ethylene-dependent gravit... 2837 0.0 > AT5G05740.1 | Symbols: ATEGY2, EGY2 | ethylene-dependent gravitropism-deficient and yellow-green-like 2 | chr5:1723836-1726859 REVERSE LENGTH=1858 Length=1858 Score = 2837 bits (1536), Expect = 0.0 Identities = 1714/1799 (95%), Gaps = 15/1799 (1%) Strand=Plus/Plus Query 1 ATGAATCTCGCGGTGGCTAGTTTTCGCGGCAATTTCGGAGTCTTGTCGCAATGCAGCTCA 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGAATCTCGCGGTGGCTAGTTTTCGCGGCAATTTCGGCGTCTTGTCGCAATGCAGCTCA 60 Query 61 TGTTGTAGTCTTCAGTTTCAGCCTTTTGTAGCTGCTACTTCGAGTCTCAGTTTTGGGCAA 120 ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 61 TGTTGTAGTCTTCAGTTTCAGCCTTTTGTAGCTGCTACTTCCAGTCTCAATTTTGGGCAA 120 Query 121 ACAGGAACATCTCGAAGGAAGAAGGATCTGAAGATTGAAAGAGTTTTCAGAAAGAGAGAG 180 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 121 ACAGGAACATCTCGAAGGAAGAAGGATCTGAAGCTTGAAAGAGTTTTCAGAAAGAGAGAG 180 Query 181 ACTTTGGTTAGAGTGACGGAGACGCAAACAGAACCAGAAGGCAATAACGACGAGGATAAT 240 ||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||| Sbjct 181 ACTTTGGTTAGAGTGACGGAGACGCAAACGGAACCAGAAGGCAATGATGATGAGGATAAT 240 Query 241 AATGGTGAAGAAGGCAAAGAGA-CTTCAGCAGATGATCCACCTACACAAATTCCTACTGA 299 | ||||||||||||||| | || ||||||||||| |||||| ||||||||||||| Sbjct 241 -A-----AAGAAGGCAAAGAGAGC-TCTGCAGATGATCCTCCTACAAAAATTCCTACTGA 293 Query 300 GTTGAATTCACAGTCAACAGTTGTGAATGAAGCGCCGGGCAATGAGGAGGAAAACAAAGC 359 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 294 GTTGAATTCACAGTCAACGGTTGTGAATGAAGCGCCGGGCAATGAGGAGGAAAACAAAGC 353 Query 360 TCAGTTCAATTCTCAGGACGGTGATAAATTAGAAATTAGCAGCGGTTCTCCTCTTCCTGG 419 |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 354 TCAGTTCAGTTCTCAGGACGGTGATAAATTAGAAGTTAGCAGTGGTTCTCCTCTTCCTGG 413 Query 420 TGTGAATGTAAGTATTATCAACAATGTTAAATACAAAGGCGACAGCTTAATGCTTTCTGT 479 |||||||||||||||||||| | |||||| ||||||| ||||||| ||||| |||||| Sbjct 414 TGTGAATGTAAGTATTATCATCCATGTTATTTACAAAGACGACAGCATAATGTTTTCTGG 473 Query 480 TTGTTTATCTTTCATAAAAAGTTGTTGTGAACAGCCATTACAATTTGATGATTCTATGAG 539 ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 474 TTGTTTATCTTTCATAAAAAGTTGTTGTGAACAGCCATTACAATTGGACGATTCCATGAG 533 Query 540 ACTCCCCAAGGAAACCATTGATATTCTCAGGGGCCAAGTATTCGGGTTTGACACCTTCTT 599 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 534 ACTCCCCAAGGAAACCATTGATATTCTCAGGGGCCAAGTATTTGGATTTGACACCTTCTT 593 Query 600 CGTAACAAGTCAAGAACCATACGAGGGTGGGGTATTGTTCAAAGGAAACCTAAGGGGCGA 659 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||| | Sbjct 594 CGTAACAAGCCAAGAACCATATGAGGGTGGGGTATTGTTCAAAGGAAATCTAAGAGGCAA 653 Query 660 GCCTGCTAAAAGTTACGAAAAGATAAAGACGAGGATGGAGAATAATTTTGGTGACCAGTA 719 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GCCTGCTACAAGTTACGAGAAGATAAAGACGAGGATGGAGAATAATTTTGGTGACCAGTA 713 Query 720 CAAGCTTTTCCTCCTCTCCAATCCTGAGGATGATAAACCTGTGGCCGTTGTTGTTCCAAG 779 |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 714 CAAGCTTTTCCTTCTCACGAATCCTGAGGATGATAAACCTGTGGCCGTTGTTGTTCCAAG 773 Query 780 AAGGTCCTTAGAACCCGAAACAACAGCTGTTCCTGAATGGTTTGCTGCTGGTTCTTTTGG 839 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 774 AAGGTCCTTAGAACCCGAGACAACAGCTGTTCCTGAATGGTTTGCTGCTGGTTCTTTTGG 833 Query 840 ATTGGTGGCATTGTTTACATTGTTTCTCCGTAATGTGCCCGCCTTGCAATCCGACTTACT 899 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 834 ATTGGTGGCATTGTTTACATTGTTTCTCCGTAATGTGCCTGCCTTGCAATCCGACTTACT 893 Query 900 ATCGGCATTTGACAACCTTGAACTGTTGAAAGATGGCTTACCGGGAGCTCTTGTCACCGC 959 |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 894 ATCGGCCTTTGACAACCTTGAACTGTTAAAAGATGGCTTACCAGGAGCTCTTGTCACCGC 953 Query 960 TCTTGTCCTTGGAGTACATGAACTGGGACACATTTTAGTTGCAAATAGCTTAGGGATAAA 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 954 TCTTGTCCTTGGAGTACATGAACTGGGACACATTTTAGTTGCAAATAGCTTAGGAATAAA 1013 Query 1020 GCTTGGTGTTCCATTCTTTGTTCCAAGTTGGCAGATAGGCTCTTTCGGTGCTATAACGAG 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 GCTTGGTGTTCCATTCTTTGTTCCAAGTTGGCAGATAGGCTCTTTCGGTGCTATAACGAG 1073 Query 1080 AATCAAAAATATCGTAGCCAAGCGAGAAGATCTTTTGAAGGTCGCAGCTGCAGGACCTTT 1139 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1074 AATCAAAAATATCGTAGCCAAGCGAGAAGATCTTTTGAAGGTTGCAGCTGCAGGACCTTT 1133 Query 1140 GGCTGGCTTTTCTCTAGGCTTGATTCTGTTTCTTCTAGGGTTGTTCGTGCCTCCTAGTGA 1199 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| Sbjct 1134 GGCTGGCTTTTCTCTAGGCTTGATTCTGTTTCTTATAGGGTTATTCGTGCCTCCCAGTGA 1193 Query 1200 CGGCATTGGCGTTGTAGTTGACGCATCAGTGTTTCACGAATCCTTCCTTGCTGGTGGTAT 1259 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1194 CGGCATTGGCGTTGTAGTTGATGCATCAGTGTTTCACGAGTCCTTCCTTGCTGGTGGTAT 1253 Query 1260 TGCAAAGCTCTTACTAGGTGATGCACTCAAAGAAGGAACTTCATTATCTCTTAACCCACT 1319 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1254 TGCAAAGCTCCTACTAGGTGATGCACTCAAAGAAGGAACTTCAATATCTCTTAACCCACT 1313 Query 1320 TGTGATCTGGGCATGGGCTGGACTTCTCATCAATGGCATTAACAGCATCCCTGCAGGGGA 1379 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1314 TGTGATCTGGGCATGGGCTGGACTTCTCATCAATGGCATTAACAGTATCCCTGCGGGGGA 1373 Query 1380 GCTCGATGGGGGCAAAATAGCTTTCTCCATTTGGGGTAGAAAGACCGCAACACGGCTCAC 1439 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1374 GCTCGATGGGGGCAAAATAGCTTTCTCCATTTGGGGAAGAAAGACCGCAACACGGCTCAC 1433 Query 1440 GGGTGCATCCATAGCGCTTTTGGGCTTATCGGCGTTGTTCAGTGACGTGGCATTCTACTG 1499 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1434 GGGTGCATCCATAGCGCTTTTGGGCTTATCGGCGTTGTTCAGCGACGTGGCATTCTACTG 1493 Query 1500 GGTGGTTCTGATATTCTTCCTGCAGCGTGGACCGATTGCACCGCTGGCTGAAGAAATCAC 1559 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1494 GGTGGTTCTGATATTCTTCCTGCAGCGTGGACCGATTGCGCCGCTGGCTGAAGAAATCAC 1553 Query 1560 GGCACCTGATGATAAGTATGTGTCTCTAGGAATCCTGGTTCTGTTCCTCTCCTTGCTTGT 1619 || ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| Sbjct 1554 GGTGCCTGATGATAAGTATGTGTCTCTTGGAATCCTGGTTTTGTTTCTCTCCTTGCTTGT 1613 Query 1620 GTGTTTGCCTTACCCATTTGCTTTCACCGGCAATGAAGCCATGATGATTGGCTTGTGAAG 1679 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1614 GTGTTTGCCTTACCCATTTGCTTTCACGGGCAATGAAGCCATGATGATTGGCTTGTGAAG 1673 Query 1680 TGAGTCATATCATTACACAGCTCAGTAAGAAATCAGAGATATAGTTGTAACTTTTTGTTT 1739 ||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 1674 TGACTCATATCATTACACCGCACAATAAGAAATCAGAGATATAGTTGTAACTTTTTGTTT 1733 Query 1740 TGGTCTCTAAGTTATGTTCTACTATT-ACATCTTAAGTTATGTTTTTGTTCTTGTTCTA 1797 ||||||||| | | |||||| || |||||| |||||||||||||||||||| |||| Sbjct 1734 TGGTCTCTA--T---GCTCTACT-TTGACATCTAAAGTTATGTTTTTGTTCTTGCTCTA 1786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88905165195 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5