BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487377 Length=1077 Score E Sequences producing significant alignments: (Bits) Value AT5G05760.1 | Symbols: SYP31, ATSED5, ATSYP31, SED5 | syntaxin ... 1712 0.0 > AT5G05760.1 | Symbols: SYP31, ATSED5, ATSYP31, SED5 | syntaxin of plants 31 | chr5:1728893-1731021 REVERSE LENGTH=1347 Length=1347 Score = 1712 bits (927), Expect = 0.0 Identities = 1029/1079 (95%), Gaps = 4/1079 (0%) Strand=Plus/Plus Query 1 AATTTGCCGGTGA-TTTTGATCCAAGTCTGACCCTACGATGGGCTCGACGTTCAGGGATC 59 ||||||||||||| ||| | | ||| || |||||| ||||||||||||||||||| |||| Sbjct 82 AATTTGCCGGTGACTTTAG-TTCAATTCCGACCCTCCGATGGGCTCGACGTTCAGAGATC 140 Query 60 GGACGGTGGAGTTTCATTCATTGTCCCAAACGTTGAGGAAGATCGGAGCGATCCCGTCCG 119 ||||||||||| |||||||| |||||||||| |||| ||||||||| || |||||||||| Sbjct 141 GGACGGTGGAGCTTCATTCACTGTCCCAAACATTGAAGAAGATCGGGGCAATCCCGTCCG 200 Query 120 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 TTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCA 260 Query 180 ATAAGAAGGCTTCCCGGATCGGGTTAGGAATCCACGAAACGTCTCAGAAGATCGCGAGGC 239 |||||||||||||||||||||||||||| || | |||||||| ||||||||| |||||| Sbjct 261 ATAAGAAGGCTTCCCGGATCGGGTTAGGTATTAAAGAAACGTCACAGAAGATCACGAGGC 320 Query 240 TCGCTAAATTGGCAAAACAATCGTCGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 299 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 321 TCGCTAAATTGGCAAAACAATCGACGATTTTCAATGACCGGACTGTGGAAATACAGGAGT 380 Query 300 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 TAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAA 440 Query 360 CCCTTCAGAACATGGAGATTGCTGATGGGAACTATTCACAGGACAAAGTTGGTCACTACA 419 ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| Sbjct 441 CCCTTCAGAACATGGAGCTTGCTGATGGGAACTATTCACAGGACCAAGTTGGTCATTACA 500 Query 420 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACAAAGCAACTTCAAGATG 479 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 501 CTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACTAAGCAGCTTCAAGATG 560 Query 480 TTCTAACTACAAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 539 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 TTCTAACTACGAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCA 620 Query 540 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATACAAAATCTGTACCTGAGCCTCCTC 599 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 621 CAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATGCAAAATCTGTACCTGAGCCTCCTC 680 Query 600 CTTGGTCAAGTTCATCAAATCCTTCCGAGAATTTACAACAACCACTATTGCCGCCATTAC 659 |||||||||||||||||||||||| || ||||||||||||||||||||| || |||||| Sbjct 681 CTTGGTCAAGTTCATCAAATCCTTTCGGGAATTTACAACAACCACTATTACCTCCATTAA 740 Query 660 ATACTGGAGCTCCTCCAGGTAGCCAGCTCAGACGCAGATCTGCGATCGAGAATGCTCCTT 719 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 741 ATACTGGAGCTCCGCCAGGTAGCCAGCTCAGACGCAGATCCGCGATCGAGAATGCTCCTT 800 Query 720 CACAGCAAATGGAGATGTCCATGTTGCAGCAAACAGTCCCAAGGCAGGAGAACTACAGCC 779 |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| Sbjct 801 CACAGCAAATGGAGATGTCCTTGTTGCAGCAAACAGTCCCAAAGCAGGAGAACTATAGCC 860 Query 780 AAAGCCGAGCGGTTGCACTTCACAGTGTTGAATCAACAATAACAGAGCTCAGTGGAATAT 839 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 861 AAAGTCGAGCGGTTGCACTTCACAGTGTTGAATCAAGAATAACAGAGCTCAGTGGAATAT 920 Query 840 TCACGCATCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATTGATGACA 899 || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 921 TCCCGCAGCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATCGATGACA 980 Query 900 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGCAGCGCTCTTCTGCAGCATCTCA 959 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 981 ATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGTAGCGCTCTTCTGCAGCATCTCA 1040 Query 960 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1041 CTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCC 1100 Query 1020 TCATTGTCTTTC-TCTTCTTTGTGGCTTGAAACAATGCCATTTAATCTCTTGTTCCTGG 1077 | ||||| |||| ||||||||||||||| ||||||| |||||| ||||||||||||||| Sbjct 1101 TGATTGT-TTTCCTCTTCTTTGTGGCTTAAAACAATACCATTTTATCTCTTGTTCCTGG 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52760772795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5