BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487407
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06060.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1375 0.0
AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTIO... 113 2e-24
> AT5G06060.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:1823842-1825894 REVERSE LENGTH=1080
Length=1080
Score = 1375 bits (744), Expect = 0.0
Identities = 853/904 (94%), Gaps = 14/904 (2%)
Strand=Plus/Plus
Query 1 ACTCACACATCCACAAAAAGAGAGACAGTGAGAGATTCCAAGGA-G-GA----GTGAGCG 54
|||||||||||||| |||| |||| ||| |||||||||||||| | || |||||||
Sbjct 1 ACTCACACATCCAC-AAAA-AGAG--AGTTAGAGATTCCAAGGAGGAGAGTGCGTGAGCG 56
Query 55 TGACAATGGAAACTGACAAAAGATGGTCTCTCGCCGGAAAAACAGCTCTGGTTACCGGCG 114
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 57 TGACAATGGAAACTGACAAAAGATGGTCTCTCGCCGGGAAAACAGCTCTGGTAACCGGCG 116
Query 115 GGACTCGTGGAATCGGGAGAGCAGTAGTGGAGGAACTAGCAAAATTTGGTGCAAAAGTTC 174
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 117 GGACTCGTGGAATCGGGAGAGCAGTTGTAGAGGAACTAGCAAAATTTGGTGCAAAAGTTC 176
Query 175 ATACTTGTTCAAGGAACCAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAATCCAATG 234
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 177 ATACTTGTTCAAGGAACCAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAAGCGAATG 236
Query 235 GTTTAGTGGTGTCTGGTTCGGTTTGTGATGCTTCGGTTAGGGATCAAAGGGAGAAGTTGA 294
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 237 GTTTAGTCGTGTCTGGTTCGGTTTGTGATGCTTCGGTTAGGGATCAGAGGGAGAAGTTGA 296
Query 295 TTCAGGAAGCTTCTTCTGCCTTCAGCGGCAAGCTCAACATCCTTATAAACAATGTTGGAA 354
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 TTCAGGAAGCTTCTTCTGCCTTCAGTGGCAAGCTCAACATCCTTATAAACAATGTTGGAA 356
Query 355 CTAATGTCAGGAAACCAACAGTTGAATACTCAAGCGAGGAATATGCAAAAATCATGACGA 414
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 357 CTAATGTCAGGAAACCAACAGTTGAATACTCAAGCGAGGAATATGCCAAAATCATGTCGA 416
Query 415 CCAACTTAGAATCCGCTTTCCATTTATCCCAAATTGCTCATCCTCTTCTAAAAGCATCTG 474
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 CCAACTTAGAATCCGCTTTCCATTTATCTCAAATTGCTCATCCTCTTCTAAAAGCATCTG 476
Query 475 GTGTCGGAAGCATTGTGTTCATCTCCTCTGTAGCTGGCCTGGTGCATCTTCAA-AGTGGA 533
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 477 GTGTCGGAAGCATTGTGTTCATCTCCTCTGTAGCTGGCCTGGTGCATCTT-AGCAGTGGA 535
Query 534 TCTATCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAAATCTAGCTTGCGAG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCTATCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAAATCTAGCTTGCGAG 595
Query 594 TGGGCAAGAGACAACATCAGAACCAATTGCGTGGCGCCGTGGTACATCAAGACCTCACTT 653
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 596 TGGGCAAGCGACAACATCAGAACCAATTGCGTGGCGCCATGGTACATCAAGACCTCACTT 655
Query 654 GTGGAAACGCTACTTGAGAAGAAAGATTTTGTTGAGGCGGTAGTTTCACGGACTCCACTT 713
|||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||
Sbjct 656 GTGGAAACGCTACTTGAGAAGAAAGAATTTGTGGAGGCTGTAGTTTCAAGGACCCCACTT 715
Query 714 GGGCGCGTTGGAGAACCAGAGGAAGT-TGCATCGCTGGTTGCCTTTCTCTGCCTTCCCGC 772
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 716 GGGCGCGTTGGAGAACCAGAGGAAGTCT-CATCGTTGGTTGCCTTTCTCTGCCTTCCCGC 774
Query 773 AGCATCTTACATTACCGGACAGGTCATATCCGTCGATGGAGGATTGACCGTCAACGGTTT 832
| ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 775 ATCATCTTATATTACCGGACAGGTCATATCCGTCGATGGAGGATTCACTGTCAACGGTTT 834
Query 833 TAGCTACACTATGTAGCCAAAATCTCTCATATCAACGTTACTAGTAAAGCAAGAATCCTC 892
|||||| ||||| |||| |||||| || |||| |||||| ||||||||||||||||
Sbjct 835 TAGCTATGCTATGAAGCCTTAATCTCGAATCGCAACATTACTAATAAAGCAAGAATCCTC 894
Query 893 GTGA 896
||||
Sbjct 895 GTGA 898
> AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTION
724 5 | chr2:19383743-19386954 FORWARD LENGTH=2062
Length=2062
Score = 113 bits (61), Expect = 2e-24
Identities = 122/148 (82%), Gaps = 17/148 (11%)
Strand=Plus/Plus
Query 192 CAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAATCCAATGGTTTAGTGGTGTCTGGT 251
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 668 CAGGAAGAGCTAAAAGCATGCTTAAATGATTGGAAATCCAATGGTTTAGTGGTGTCTGGT 727
Query 252 TCGGTTTGTGATGCTTCGGTTAGGGATCAAAGGGAGAAGTTGATTCAGGAAGCT-TCTTC 310
| |||| | | || |||| |||||||||||||||||||||| | |||||
Sbjct 728 TTGGTT----A-G--------AG--ATCAGAGGGAGAAGTTGATTCAGGAAG-TGTCTTC 771
Query 311 TGCCTTCAGCGGCAAGCTCAACATCCTT 338
| ||||| |||||||||||||| |||
Sbjct 772 CACGTTCAGTGGCAAGCTCAACATTCTT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5