BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487407

Length=896
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06060.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfam...  1375    0.0  
  AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTIO...   113    2e-24


> AT5G06060.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily 
protein | chr5:1823842-1825894 REVERSE LENGTH=1080
Length=1080

 Score = 1375 bits (744),  Expect = 0.0
 Identities = 853/904 (94%), Gaps = 14/904 (2%)
 Strand=Plus/Plus

Query  1    ACTCACACATCCACAAAAAGAGAGACAGTGAGAGATTCCAAGGA-G-GA----GTGAGCG  54
            |||||||||||||| |||| ||||  ||| |||||||||||||| | ||    |||||||
Sbjct  1    ACTCACACATCCAC-AAAA-AGAG--AGTTAGAGATTCCAAGGAGGAGAGTGCGTGAGCG  56

Query  55   TGACAATGGAAACTGACAAAAGATGGTCTCTCGCCGGAAAAACAGCTCTGGTTACCGGCG  114
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct  57   TGACAATGGAAACTGACAAAAGATGGTCTCTCGCCGGGAAAACAGCTCTGGTAACCGGCG  116

Query  115  GGACTCGTGGAATCGGGAGAGCAGTAGTGGAGGAACTAGCAAAATTTGGTGCAAAAGTTC  174
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  117  GGACTCGTGGAATCGGGAGAGCAGTTGTAGAGGAACTAGCAAAATTTGGTGCAAAAGTTC  176

Query  175  ATACTTGTTCAAGGAACCAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAATCCAATG  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  177  ATACTTGTTCAAGGAACCAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAAGCGAATG  236

Query  235  GTTTAGTGGTGTCTGGTTCGGTTTGTGATGCTTCGGTTAGGGATCAAAGGGAGAAGTTGA  294
            ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  237  GTTTAGTCGTGTCTGGTTCGGTTTGTGATGCTTCGGTTAGGGATCAGAGGGAGAAGTTGA  296

Query  295  TTCAGGAAGCTTCTTCTGCCTTCAGCGGCAAGCTCAACATCCTTATAAACAATGTTGGAA  354
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  297  TTCAGGAAGCTTCTTCTGCCTTCAGTGGCAAGCTCAACATCCTTATAAACAATGTTGGAA  356

Query  355  CTAATGTCAGGAAACCAACAGTTGAATACTCAAGCGAGGAATATGCAAAAATCATGACGA  414
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  357  CTAATGTCAGGAAACCAACAGTTGAATACTCAAGCGAGGAATATGCCAAAATCATGTCGA  416

Query  415  CCAACTTAGAATCCGCTTTCCATTTATCCCAAATTGCTCATCCTCTTCTAAAAGCATCTG  474
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  417  CCAACTTAGAATCCGCTTTCCATTTATCTCAAATTGCTCATCCTCTTCTAAAAGCATCTG  476

Query  475  GTGTCGGAAGCATTGTGTTCATCTCCTCTGTAGCTGGCCTGGTGCATCTTCAA-AGTGGA  533
            |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||
Sbjct  477  GTGTCGGAAGCATTGTGTTCATCTCCTCTGTAGCTGGCCTGGTGCATCTT-AGCAGTGGA  535

Query  534  TCTATCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAAATCTAGCTTGCGAG  593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  536  TCTATCTATGGTGCAACTAAAGGAGCACTTAATCAGCTTACAAGAAATCTAGCTTGCGAG  595

Query  594  TGGGCAAGAGACAACATCAGAACCAATTGCGTGGCGCCGTGGTACATCAAGACCTCACTT  653
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  596  TGGGCAAGCGACAACATCAGAACCAATTGCGTGGCGCCATGGTACATCAAGACCTCACTT  655

Query  654  GTGGAAACGCTACTTGAGAAGAAAGATTTTGTTGAGGCGGTAGTTTCACGGACTCCACTT  713
            |||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||
Sbjct  656  GTGGAAACGCTACTTGAGAAGAAAGAATTTGTGGAGGCTGTAGTTTCAAGGACCCCACTT  715

Query  714  GGGCGCGTTGGAGAACCAGAGGAAGT-TGCATCGCTGGTTGCCTTTCTCTGCCTTCCCGC  772
            |||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct  716  GGGCGCGTTGGAGAACCAGAGGAAGTCT-CATCGTTGGTTGCCTTTCTCTGCCTTCCCGC  774

Query  773  AGCATCTTACATTACCGGACAGGTCATATCCGTCGATGGAGGATTGACCGTCAACGGTTT  832
            | ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  775  ATCATCTTATATTACCGGACAGGTCATATCCGTCGATGGAGGATTCACTGTCAACGGTTT  834

Query  833  TAGCTACACTATGTAGCCAAAATCTCTCATATCAACGTTACTAGTAAAGCAAGAATCCTC  892
            ||||||  ||||| ||||  ||||||  ||  |||| |||||| ||||||||||||||||
Sbjct  835  TAGCTATGCTATGAAGCCTTAATCTCGAATCGCAACATTACTAATAAAGCAAGAATCCTC  894

Query  893  GTGA  896
            ||||
Sbjct  895  GTGA  898


> AT2G47220.1 | Symbols: DUF5, ATDUF5 | DOMAIN OF UNKNOWN FUNCTION 
724 5 | chr2:19383743-19386954 FORWARD LENGTH=2062
Length=2062

 Score =  113 bits (61),  Expect = 2e-24
 Identities = 122/148 (82%), Gaps = 17/148 (11%)
 Strand=Plus/Plus

Query  192  CAGGAAGAGCTAAATGCATGCTTGAATGATTGGAAATCCAATGGTTTAGTGGTGTCTGGT  251
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  668  CAGGAAGAGCTAAAAGCATGCTTAAATGATTGGAAATCCAATGGTTTAGTGGTGTCTGGT  727

Query  252  TCGGTTTGTGATGCTTCGGTTAGGGATCAAAGGGAGAAGTTGATTCAGGAAGCT-TCTTC  310
            | ||||    | |        ||  |||| |||||||||||||||||||||| | |||||
Sbjct  728  TTGGTT----A-G--------AG--ATCAGAGGGAGAAGTTGATTCAGGAAG-TGTCTTC  771

Query  311  TGCCTTCAGCGGCAAGCTCAACATCCTT  338
              | ||||| |||||||||||||| |||
Sbjct  772  CACGTTCAGTGGCAAGCTCAACATTCTT  799



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43753942037


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5