BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487418 Length=1593 Score E Sequences producing significant alignments: (Bits) Value AT5G06150.1 | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein... 2495 0.0 AT1G34460.1 | Symbols: CYCB1;5, CYC3 | CYCLIN B1;5 | chr1:12595... 603 2e-171 > AT5G06150.1 | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein | chr5:1859279-1861649 REVERSE LENGTH=1680 Length=1680 Score = 2495 bits (1351), Expect = 0.0 Identities = 1519/1600 (95%), Gaps = 11/1600 (1%) Strand=Plus/Plus Query 1 AATCTCAGAGGCTCTTTACGAAAGAGAAAAATCAAGACTAAGAAACAAGAAGAGTAAGAA 60 |||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3 AATCGCAGAGACTCTTTACGAAAGAGAAATATCAAGACTAAGAAACAAGAAGAGTAAGAA 62 Query 61 TCAGTAGGAGAGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTC 120 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TCATTGGGAGAGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTC 122 Query 121 CTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCGC 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 123 CTCTCGTTGATGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAGTCGGCGTGCCC 182 Query 181 TCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAACCTCAACCTC 240 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 183 TCGGTGACATCGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTC 242 Query 241 CGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCCAATGCCCAACTCG 300 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 243 CGATTAATCGACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCGAATGCCCAACTCG 302 Query 301 AAAGAAAGCCAATCAATGGAGACAACAAGGTTCCGGCTCTTGGTCCAAAGAGACAACCTC 360 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 303 AAAGAAAGCCAATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGACAACCTC 362 Query 361 TTGCTACAAGAAACCCAGAAGCTCAAAAGGCGGTTCAGAAGA-GAAACCTAGTGGTTAAG 419 ||||| ||||||||||||||||||||| |||||||||||||| ||| | ||||||||||| Sbjct 363 TTGCTGCAAGAAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATC-TAGTGGTTAAG 421 Query 420 CAACCGACCAAACCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAACTA 479 |||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 422 CAACAGACGAAGCCTGTTGAAGTGATCGAGACGAAGAAGGAGGTGACTAAAAAGGAAGTA 481 Query 480 GCAATGTCACCTAAGGATAAGAAAGTGACGTACTCGTCTGTTCTTAGTGCTCGGAGCAAA 539 || |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 482 GCGATGTCACCTAAGAATAAGAAAGTGACGTACTCGTCTGTACTTAGTGCTCGGAGCAAA 541 Query 540 GCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGAATCTGACAAAGAT 599 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 542 GCTGCTTGTGGTATAGTCAACAAACCAAAGATTATCGATATTGATGAATCTGACAAAGAT 601 Query 600 AACCATCTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAG 659 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 AACCATTTGGCTGCGGTGGAGTATGTTGATGATATGTACTCGTTCTATAAAGAAGTTGAG 661 Query 660 AAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAATGAGAAGATGAGA 719 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 662 AAGGAGAGTCAGCCTAAGATGTACATGCACATTCAGACTGAAATGAATGAGAAGATGAGA 721 Query 720 GCGATTTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTTAACCTGGAAACT 779 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 722 GCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCTCAACCTTGAAACT 781 Query 780 CTCTACCTCACTGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCCAAGAGA 839 || |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 782 CTGTACCTCACCGTCAACATCATTGATCGATTCCTCTCTGTGAAAGCTGTCCCTAAAAGA 841 Query 840 GAGTTGCAGCTTGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATTTGG 899 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 842 GAGTTACAGCTAGTGGGAATCAGTGCCTTGCTTATTGCTTCCAAATATGAAGAAATCTGG 901 Query 900 CCACCTCAGGTTAACGATTTGGTGTATGTCACGGACAATGCTTACAACAGCAGACAGATA 959 |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 902 CCACCTCAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATT 961 Query 960 CTAGTGATGGAGAAGACTATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAA 1019 || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 962 CTGGTGATGGAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAA 1021 Query 1020 TACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATTTCTGACCCTGAAATGGAGAATATG 1079 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 1022 TACGTCTTCCTTGTCCGCTTCATCAAAGCTTCGATGTCTGATCCAGAAATGGAGAATATG 1081 Query 1080 GTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACGCCTTGATGTTCTGTCCCTCC 1139 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 1082 GTTCACTTCCTTGCTGAATTGGGGATGATGCATTACGACACCTTGACGTTCTGTCCCTCC 1141 Query 1140 ATGCTTGCTGCTTCAGCTGTTTACACTGCAAGATGCTCATTGAACAAGTCCCCTGCTTGG 1199 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1142 ATGCTTGCTGCTTCAGCTGTTTACACGGCAAGATGCTCATTGAACAAGTCCCCTGCTTGG 1201 Query 1200 ACTGATACATTGCAGTTCCACACTGGCTACACAGAATCTGAGATTATGGACTGCTCGAAG 1259 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 1202 ACTGATACATTGCAGTTCCACACCGGCTACACAGAGTCTGAGATTATGGACTGCTCAAAG 1261 Query 1260 CTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAG 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1262 CTTTTAGCTTTTCTTCACTCGAGATGCGGTGAGAGCAGGCTACGTGCAGTGTACAAGAAG 1321 Query 1320 TACTCAAAGGCTGAGAATGGAGGTGTTGCTTTGGTTTCACCAGCCAAGTCCCTCTTGAGT 1379 ||||| ||||| |||||||||||||||||| ||||||| || |||||||| ||||||||| Sbjct 1322 TACTCGAAGGCAGAGAATGGAGGTGTTGCTATGGTTTCTCCGGCCAAGTCTCTCTTGAGT 1381 Query 1380 GCTGCTGCTGATTGGAAGAAGCCCGTTTCTTCTTAGATGttttttttCATCAGATCTCTC 1439 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1382 GCTGCTGCTGATTGGAAGAAGCCTGTTTCTTCTTAGATGTTTTTTTTCATCAGATCTCTC 1441 Query 1440 TCTGATTCAAAATTCTAGATTTGACATGTTAAAATACTCTTTTGTTTT---GAGTTCAAA 1496 |||||||||||||||||||||| ||| | | |||||||||||||| ||||||||| Sbjct 1442 TCTGATTCAAAATTCTAGATTTCTCATC--AGA-TACTCTTTTGTTTTTTTGAGTTCAAA 1498 Query 1497 CGTATTAATGAATTCTT---ATCAGTGTTTTTCTTAGTCTCTGATTACTTTGATTTTAGT 1553 ||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||| Sbjct 1499 CGTATTAATGAATTCTTCTCATCAGTGTTTTTCTTAATCTCTGATTACTTGGATATTAGA 1558 Query 1554 TTTCTACTGTATCTTTAACAGATAGATGATGTTTGATTGT 1593 |||||||| ||||||||||||||||||||||||||| ||| Sbjct 1559 TTTCTACTATATCTTTAACAGATAGATGATGTTTGACTGT 1598 > AT1G34460.1 | Symbols: CYCB1;5, CYC3 | CYCLIN B1;5 | chr1:12595110-12599628 FORWARD LENGTH=1476 Length=1476 Score = 603 bits (326), Expect = 2e-171 Identities = 370/391 (95%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 71 AGCGATCATGGCGACGAGAGCAAACGTACCTGAACAAGTCAGAGGTGCTCCTCTCGTTGA 130 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 330 AGCGATCATGGCGACGAGGGCAAACATACCTGAACAAGTCAGAGGTGCTCCTCTCGTTGA 389 Query 131 TGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCGCTCGGTGACAT 190 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 390 TGGTTTGAAGATTCAGAACAAAAACGGTGCTGTGAAGAATCGGCGTGCCCTCGGTGACAT 449 Query 191 CGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAACCTCAACCTCCGATTAATCG 250 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 450 CGGAAATCTTGTTTCTGTTCCCGGAGTTCAAGGAGGAAAGGCTCAACCTCCGATTAATCG 509 Query 251 ACCCATTACTCGAAGTTTCCGTGCCCAGTTATTAGCCAATGCCCAACTCGAAAGAAAGCC 310 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 510 ACCCATTACTCTTAGTTTTCGTGCCCAGTTATTAGCGAATGCCCAACTCGAAAGAAAGCC 569 Query 311 AATCAATGGAGACAACAAGGTTCCGGCTCTTGGTCCAAAGAGACAACCTCTTGCTACAAG 370 |||||||||||||||||||||||| ||||||||||||||||| || ||||||||| |||| Sbjct 570 AATCAATGGAGACAACAAGGTTCCAGCTCTTGGTCCAAAGAGTCAGCCTCTTGCTGCAAG 629 Query 371 AAACCCAGAAGCTCAAAAGGCGGTTCAGAAGA-GAAACCTAGTGGTTAAGCAACCGACCA 429 ||||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||| | Sbjct 630 AAACCCAGAAGCTCAAAGGGCGGTTCAGAAGAAGAATC-TAGTGGTTAAGCAACAGACGA 688 Query 430 AACCTGTTGAAGTGATCGAGACGAAGAAGGA 460 | ||||||||||||||||||||||||| ||| Sbjct 689 AGCCTGTTGAAGTGATCGAGACGAAGA-GGA 718 Score = 540 bits (292), Expect = 2e-152 Identities = 312/322 (97%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 527 TGCTCGGAGCAAAGCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGA 586 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGCTCAAAGCAAAGCTGCTTGTGGTATAGTCAACAAACCAAAGATTCTTGATATTGATGA 779 Query 587 ATCTGACAAAGATAACCATCTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTA 646 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 780 ATCTGACAAAGATAATCATGTGGCTGCAGTGGAGTATGTTGATGATATGTACTCGTTCTA 839 Query 647 TAAAGAAGTTGAGAAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAA 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TAAAGAAGTTGAGAAGGAGAGTCAGCCTAAGATGTACATGCACATTCAAACTGAGATGAA 899 Query 707 TGAGAAGATGAGAGCGATTTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCT 766 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TGAGAAGATGAGAGCGATCTTGATTGATTGGTTACTAGAAGTTCACATCAAGTTTGAGCT 959 Query 767 TAACCTGGAAACTCTCTACCTCACTGTCAACATCATTGATCGATTCCTCTCTGTGAAAGC 826 |||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 960 TAACCTTGAAACTCTGTACCTCACTGTTAACATCATTGATCGATTCCTCTATGTGAAAGC 1019 Query 827 TGTCCCCAAGAGAGAGTTGCAG 848 ||| |||||||||||||||||| Sbjct 1020 TGTTCCCAAGAGAGAGTTGCAG 1041 Score = 228 bits (123), Expect = 2e-58 Identities = 149/162 (92%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 906 CAGGTTAACGATTTGGTGTATGTCACGGACAATGCTTACAACAGCAGACAGATACTAGTG 965 |||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1039 CAGGTTAACGATCTGGTGTATGTCACGGACAATGCTTACAGTAGCAGACAGATTCTAGTG 1098 Query 966 ATGGAGAAGACTATTCTTGGAAACCTCGAATGGTATTTGACAGTCCCGACTCAATACGTC 1025 ||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1099 ATGAAGAAGGCAATTCTTGGAAACCTCGAATGGTATTTGACAATCCCGACTCAATACGTC 1158 Query 1026 TTCCTTGTCCGCTTCATCAAAGCTTCGATTTCTGACCCTGAA 1067 |||||| || ||||||||||||||||||| ||||| || ||| Sbjct 1159 TTCCTTTTCTGCTTCATCAAAGCTTCGATATCTGATCCAGAA 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78664254015 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5