BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487434
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06260.1 | Symbols: | TLD-domain containing nucleolar prote... 2185 0.0
AT4G34070.1 | Symbols: | Calcium-binding EF-hand family protei... 1221 0.0
AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 412 3e-114
AT2G44850.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 231 1e-59
> AT5G06260.1 | Symbols: | TLD-domain containing nucleolar protein
| chr5:1902599-1905101 REVERSE LENGTH=1697
Length=1697
Score = 2185 bits (1183), Expect = 0.0
Identities = 1349/1427 (95%), Gaps = 20/1427 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 60
|||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 267 ATGGGAAATTCGAA-T--TCGTCTTCTGTTGATCATCGCTTCATTTCTGCTTCCAGAGCT 323
Query 61 TTTACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCC 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 324 TTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTCGTCTCCCTCGCTTCCAATTCT 383
Query 121 CAGAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 384 CAGAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGT 443
Query 181 TCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACACAGGAAAGATGATAAATTGACT 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 444 TCTTTAGGAGAAAGGATGTTTGATATGGTCACTCAACGCAGGAAAGATGATAAAATGACT 503
Query 241 TTTGAAGATCTTGTTATTGCTAAGGCAACCTACGAGAAAGGAACTGATGATGAGATTGCT 300
| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 504 TATGAAGATCTTGTTATTGCTAAGGCAACATACGAGAAAGGAACTGACGATGAGATTGCT 563
Query 301 GAGTTTATTTACCAGACTTTGGATGTAAATGGCAATGGGGTCTTGACAAGGCCTGATTTA 360
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 564 GAGTTTATTTACCAGACTTTGGATGTTAATGGCAATGGGGTCTTGTCAAGGTCTGATTTA 623
Query 361 GAGTCGGTACTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAAAGTTCTGATGCAGAA 420
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 624 GAGTCGTTCCTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAA 683
Query 421 TCAAGTGATTACAAAG-AGATGGTGGATGCGCTACTCAATGCCGCCACTTTCTCAAAATC 479
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 684 TCAAGTGATTAC-AAGAAGATGGTGGATGCGCTACTCAATGCCGCTACTTTCTCAAAATC 742
Query 480 TGATGATGGTTCTGAAAAAGGAATGTCTTTTGAGGATTTCAGAAGCTGGTGCTCACTCGT 539
||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 743 TGATGATGGTTCTGAAAAAGGAATGTCTTTTGAAGACTTCAGAAGCTGGTGCTCATTCGT 802
Query 540 TCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TCCAACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGG 862
Query 600 ATATCAAGTCCCGCATCTGCTTTATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAA 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 863 ATATCAAGTCCCGCATCTGCTATATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAA 922
Query 660 GAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCTTGTAGAGTGGAA 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 923 GAAGGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCATGAGCTTGTAGAGTGGAA 982
Query 720 GCTGCTGTATCACAGTTCCTTACACGGTCAAAGCTTCAACACATTCCTAGGACACACATC 779
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 983 GCTGTTGTATCACAGTTCCGTACACGGTCAAAGCTTCAACACATTCCTCGGACACACATC 1042
Query 780 AAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAGGGATGTGTGTACGG 839
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct 1043 AAACACTGGTATGTCGGCATCTGTGCTAATCATCAAAGACACAGAAGGATATGTGTATGG 1102
Query 840 AGGATACGCCTCTCAACCTTGGGAGAGGTATAGCGATTTCTATGGAGACATGAAGTCTTT 899
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1103 AGGGTACGCCTCTCAACCTTGGGAGAGGTACAGCGATTTCTATGGAGACATGAAGTCTTT 1162
Query 900 TCTTTTCCAGCTAAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAATAT 959
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1163 TCTTTTCCAGCTTAACCCTAAAGCAGCCATTTACCGACCAACTGGAGCAAACACCAACAT 1222
Query 960 ACAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCAAATGGGATAGGATTTGGAGG 1019
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1223 TCAATGGTGTGCTACTAATTTCACATCGGAGAACATTCCGAATGGGATAGGATTTGGAGG 1282
Query 1020 TAAAATCAATCACTTTGGTCTCTTTATATCAGCAAGCTTCGACCAAGGCCAGACATTTGA 1079
||| || ||||||||||| || |||||||||||||||||||| |||||||||||||| ||
Sbjct 1283 TAAGATAAATCACTTTGGCCTGTTTATATCAGCAAGCTTCGATCAAGGCCAGACATTCGA 1342
Query 1080 ATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATACAGCCAGAAGTGAT 1139
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1343 ATGCACAACGTTTGGTAGCCCGAGCCTTTCCAAGACGAGCAGAATTCAGCCAGAAGTGAT 1402
Query 1140 AGAATGCTGGGGAATCGTTCAGGCCTCAAACGAACAAGACACCAAACACAATGCTATGAA 1199
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 1403 AGAATGCTGGGGAATCGTTCAGGCCTCAAATGAACAAGACACCAAACATAACGCCATGAA 1462
Query 1200 AGGTACTGTTCTAGAGAGATTTAAGGAAGATCGAAACATGCTCAAACTAGTCGGCATGGC 1259
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1463 AGGTACTGTTCTGGAGAGGTTTAAGGAAGATCGCAACATGCTCAAACTAGTCGGCATGGC 1522
Query 1260 AGGCAATTCAAATGATTGA-TAGAGGATTTTGGTTCTGAGATTTAATCTTAGATATACAC 1318
||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||
Sbjct 1523 AGGCAATTCAAATGATTGAATAGAGAATTTAGGTTCTGAGATTCAATCTTAGATATACAC 1582
Query 1319 TAAACGTTTGTATACATT-TCGAGTGTGAGTGTGCAAATACATTATGTACATTA-----T 1372
| |||||| ||||||||| | ||| ||||||||||||| |||||||||||| || |
Sbjct 1583 TCAACGTTCGTATACATTGT-GAGAGTGAGTGTGCAAAAACATTATGTACAATAAAGAGT 1641
Query 1373 G----A--AT-CATACCAGTTCCATTTCACTTGAATCACATCAAAAT 1412
| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 1642 GTTGTATGATTCATACCATTTCCATTTCACTTGAATCACATCAAAAT 1688
> AT4G34070.1 | Symbols: | Calcium-binding EF-hand family protein
| chr4:16323095-16325295 REVERSE LENGTH=1230
Length=1230
Score = 1221 bits (661), Expect = 0.0
Identities = 739/777 (95%), Gaps = 3/777 (0%)
Strand=Plus/Plus
Query 3 GGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTT 62
|||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 183 GGGAAATTCGAA-T--TCGTCTTCTGTTGATCATTGCTTCACTTCTGCTTCCAGAGCTTT 239
Query 63 TACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCCCA 122
||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||| ||
Sbjct 240 TACTCAGAAGAAGCTCGCTGATCTCAAATCTCTCTTTTTTTCCCTCGCTTCCAAGTCTCA 299
Query 123 GAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTC 182
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTC 359
Query 183 TTTAGGAGAAAGGATGTTTGATATGGTCACTCAACACAGGAAAGATGATAAATTGACTTT 242
||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 360 TTTAGGAGAAAGGATCTTTGATATGGTTACTCAACACAGGAAAGATGATAAAATGACTTT 419
Query 243 TGAAGATCTTGTTATTGCTAAGGCAACCTACGAGAAAGGAACTGATGATGAGATTGCTGA 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TGAAGATCTTGTTATTGCTAAGGCAACATACGAGAAAGGAACTGATGATGAGATTGCTGA 479
Query 303 GTTTATTTACCAGACTTTGGATGTAAATGGCAATGGGGTCTTGACAAGGCCTGATTTAGA 362
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 480 GTTTATTTACCAGACTTTGGATGTTAATGGCAATGGGGTCTTGAGAAGGTCTGATTTAGA 539
Query 363 GTCGGTACTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAAAGTTCTGATGCAGAATC 422
|||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 540 GTCGTTCCTGGTGGTGATTTTGAAGAGTGTGTTCTCCACTGAGAGTTCTGATGCGGAATC 599
Query 423 AAGTGATTACAAAGAGATGGTGGATGCGCTACTCAATGCCGCCACTTTCTCAAAATCTGA 482
|||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 600 AAGTGATTACAAGGAGATGGTAGATGCGCTACTCGATGCCGCTACTTTCTCAAAATCTGA 659
Query 483 TGATGGTTCTGAAAAAGGAATGTCTTTTGAGGATTTCAGAAGCTGGTGCTCACTCGTTCC 542
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 660 TGATGGTTCTGAAAAAGGAATGTCTTTTGAAGACTTCAGAAGCTGGTGCCCACTCGTTCC 719
Query 543 AACTATCAGAAAGTTCCTCGGAAGCTTGCTTATGCCCCCGAGTACAGTGAGACCTGGATA 602
||||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||
Sbjct 720 AACTATCAGAAAGTTCCTCGGCAGCTTGCTTATTCCCCCGGGTCCAGTGAGACCTGGATA 779
Query 603 TCAAGTCCCGCATCTGCTTTATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAAGAA 662
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCAAGTCCCGGATCTGCTATATGAAGATAGTGTGAGTTCAGATAGGCTACTATTAAAGAA 839
Query 663 GGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCTTGTAGAGTGGAAGCT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAATACGCTTGGCATATTGGAGGAGCTCTTCCTCACCACGAGCTTGTAGAGTGGAAGCT 899
Query 723 GCTGTATCACAGTTCCTTACACGGTCAAAGCTTCAACACATTCCTAGGACACACATC 779
| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 GTTGTATCGCAGTTCCTTACACGGTCAAAGCTTCAACACATTCCTCGGACACACATC 956
> AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: inflorescence meristem,
flower, cultured cell; EXPRESSED DURING: petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1);
Has 171 Blast hits to 170 proteins in 31 species:
Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants
- 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
| chr2:18699428-18703093 REVERSE LENGTH=1645
Length=1645
Score = 412 bits (223), Expect = 3e-114
Identities = 249/261 (95%), Gaps = 3/261 (1%)
Strand=Plus/Plus
Query 3 GGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTT 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGGAAATTCGAA-T--TCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTT 347
Query 63 TACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCCCA 122
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 348 TACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCTCA 407
Query 123 GAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTC 182
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTC 467
Query 183 TTTAGGAGAAAGGATGTTTGATATGGTCACTCAACACAGGAAAGATGATAAATTGACTTT 242
||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 468 TTTAGGAGAAAGGATCTTTGATATGGTTACTCAACACAGGAAAGATGATAAAATGACTTT 527
Query 243 TGAAGATCTTGTTATTGCTAA 263
|||||||||||||||||||||
Sbjct 528 TGAAGATCTTGTTATTGCTAA 548
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 231 TAAATTGACTTTTGAAGATCTTGTTATTGCTAAG 264
|||| |||||||||||||||||||||||||||||
Sbjct 546 TAAAATGACTTTTGAAGATCTTGTTATTGCTAAG 579
> AT2G44850.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G45380.1); Has 138 Blast hits to 138 proteins
in 53 species: Archae - 0; Bacteria - 0; Metazoa - 73;
Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink). | chr2:18498672-18500823 FORWARD LENGTH=1203
Length=1203
Score = 231 bits (125), Expect = 1e-59
Identities = 149/160 (93%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 60
||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 ATGGG-AATTTGAA-T--TCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCT 126
Query 61 TTTACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCC 120
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 127 TTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCT 186
Query 121 CAGAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGG 160
|| ||||||||||||||||| |||||||||||||||||||
Sbjct 187 CACAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGG 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5