BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487437
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06280.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1144 0.0
AT5G06278.1 | Symbols: | pseudogene of abscisic acid-responsiv... 518 4e-146
> AT5G06280.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G52520.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:1917641-1918887 REVERSE LENGTH=981
Length=981
Score = 1144 bits (619), Expect = 0.0
Identities = 834/930 (90%), Gaps = 45/930 (5%)
Strand=Plus/Plus
Query 1 AAGACTATGGAGATTCCGCCGTCACAATCTCCGGCGACGCCGCTCCGTCGTACAAAATCC 60
|||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 33 AAGACTATGGAGATTCCGCCGTCACAATCTCCGGCGACTCAACTCCGCCGTACAAAATCC 92
Query 61 ATATCCACCATGACCACTTTGACTCCTCCCGAAATTCCTTTCGACATGGCTTCAACGCCG 120
||||||| |||||| ||| | |||||||| ||| ||||||||||||| ||||||||||||
Sbjct 93 ATATCCAACATGACGACTCTAACTCCTCCAGAAGTTCCTTTCGACATAGCTTCAACGCCG 152
Query 121 CCGTCTTCGTTCGATTATGAGCTCATCTCCATTAAACCATCCTCTTTCGTAGCTTACACT 180
||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 153 CCGTCTTCGTTCGATTACGAGCTCATCTCCGTAAAACCATCCTCTTTCGTAGCTTACACT 212
Query 181 TCTCTCAGAGATATCATCTCTTCTCCGAGTAACTCTTCACTCAATTTACCGACGATCAAC 240
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 213 TCTCTCAGAGATATCATCTCTTCTCCGATTAACTCTTCACTCAATTTACCGTCGATCAAC 272
Query 241 GGTAGCTTCTCTCCGGTTATATCCACCGCCG--G-AGATATCTCGATTCGTAACCGTCTC 297
||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct 273 GGTAGCTGCTCTCCTGTTATATCCACCGCCGCCGGAGATATCTCGATTCGTAACCGTCTC 332
Query 298 GTTAAGAAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCGGAGGATTCT 357
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 333 GTTAAGCAAGCTGCTTTGTCTTATCTTCAACCAACGGTGCTTACTTCGTCAGATGATTCT 392
Query 358 GCTGGTTCTCAATTCTTCCGCCGTGTATGGATTCATTTATCCGCCGGAATTCGGTTCTTG 417
||||||||||||||||||||||| || ||| |||| ||||||||||| ||| |||||||
Sbjct 393 GCTGGTTCTCAATTCTTCCGCCGCGTTTGGCTTCACTTATCCGCCGGGTTTCAGTTCTTG 452
Query 418 AGACGTGTATTTGATTGGATTTTTCAATCGATTCGTGTTCCTTTGATTGTCAAATAGA-T 476
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 453 CGACGTGTGTTTGATTGGATTTTTCAATCGTTTCGTGTTCCTTTGATTGTCAAATAAACT 512
Query 477 T--ATTCTGCAGATAAAGAAGTGAAAGGATTTGGTGAGAGT--T-TGA-G-A--A----T 523
| ||| || | | || ||||||| ||||||||||||||| | ||| | | | |
Sbjct 513 TTGATT-TG-ACA-AAGGAAGTGAT-GGATTTGGTGAGAGTGCTCTGATGCAGTAAAGCT 568
Query 524 -G----T--ATATGTTTGTTTT-AA-ACCTTATCGATGGTGAATTGTTGTTGCAATTGCT 574
| | ||||||||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 569 TGAGGATGTATATGTTTGTTTTGAATACCTTATAGATGGTGAATTGTTGTTGCAATTGCT 628
Query 575 TGAAGATTTGGAGGCTCCAGTGGAAGCCACATTGCAGTAGTTGAGCAATTACTAAATGTC 634
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 629 TGAAGATTTGGAGGCTCCAGTGGAAGATACATTGCAGTAGTTGAGCAATTACTAAATGTC 688
Query 635 CTCTTATCTTTAAGACGGAGATTCCTTGATCGATGTCCGATTCATGCTTTGACATGTATG 694
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 689 CTCTTATCTTTAAGACAGAGATTCCTTGATCGATGTCAGATTCATGTTTTGACATGTATG 748
Query 695 GACATAGTAGCTTCTCATAGACATAGCTAAGTCCCTGTCAGAAACCAAGAGAAGAAGATT 754
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 749 GACATAGTAGCTTCTCGTAGACATAGCTAAGTCCCTGTTAGAAACCAAGAGAAGAAGATT 808
Query 755 GGT--TTT-GTGAATCAAAGAATGA-A-TG----CTCATGAGATTTTTCTTGCATTGTA- 804
||| ||| ||||||| |||||||| | || ||||| |||||||| ||||||||||
Sbjct 809 GGTCGTTTTGTGAATCTAAGAATGAGAATGAATTCTCATTAGATTTTTATTGCATTGTAC 868
Query 805 -GTA-T--G-ACCTGTGATTTCGGGTACCATAAGTAGACGAGAAGAGCGATTTTGATCTC 859
||| | | ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 869 TGTAGTTAGTACCTGTGATTTCGGGTAACATAAGTAGATGAGAAGAGCGATTTTGATCTC 928
Query 860 ACCGTAGAGTGGTAACCTACGGTTAGATGA 889
||||||||||||||||| ||| |||||||
Sbjct 929 TCCGTAGAGTGGTAACCTGCGGATAGATGA 958
> AT5G06278.1 | Symbols: | pseudogene of abscisic acid-responsive
HVA22 family protein | chr5:1917211-1918112 FORWARD LENGTH=902
Length=902
Score = 518 bits (280), Expect = 4e-146
Identities = 357/391 (91%), Gaps = 17/391 (4%)
Strand=Plus/Minus
Query 516 TTGAGAATGTATATGTTTGTTTT-AA-ACCTTATCGATGGTGAATTGTTGTTGCAATTGC 573
||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 844 TTGAGGATGTATATGTTTGTTTTGAATACCTTATAGATGGTGAATTGTTGTTGCAATTGC 785
Query 574 TTGAAGATTTGGAGGCTCCAGTGGAAGCCACATTGCAGTAGTTGAGCAATTACTAAATGT 633
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 784 TTGAAGATTTGGAGGCTCCAGTGGAAGATACATTGCAGTAGTTGAGCAATTACTAAATGT 725
Query 634 CCTCTTATCTTTAAGACGGAGATTCCTTGATCGATGTCCGATTCATGCTTTGACATGTAT 693
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 724 CCTCTTATCTTTAAGACAGAGATTCCTTGATCGATGTCAGATTCATGTTTTGACATGTAT 665
Query 694 GGACATAGTAGCTTCTCATAGACATAGCTAAGTCCCTGTCAGAAACCAAGAGAAGAAGAT 753
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 GGACATAGTAGCTTCTCGTAGACATAGCTAAGTCCCTGTTAGAAACCAAGAGAAGAAGAT 605
Query 754 TGGT--TTT-GTGAATCAAAGAATGA-A-TG----CTCATGAGATTTTTCTTGCATTGTA 804
|||| ||| ||||||| |||||||| | || ||||| |||||||| ||||||||||
Sbjct 604 TGGTCGTTTTGTGAATCTAAGAATGAGAATGAATTCTCATTAGATTTTTATTGCATTGTA 545
Query 805 --GTA-T--G-ACCTGTGATTTCGGGTACCATAAGTAGACGAGAAGAGCGATTTTGATCT 858
||| | | ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 544 CTGTAGTTAGTACCTGTGATTTCGGGTAACATAAGTAGATGAGAAGAGCGATTTTGATCT 485
Query 859 CACCGTAGAGTGGTAACCTACGGTTAGATGA 889
| ||||||||||||||||| ||| |||||||
Sbjct 484 CTCCGTAGAGTGGTAACCTGCGGATAGATGA 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5