BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487440 Length=1000 Score E Sequences producing significant alignments: (Bits) Value AT5G06300.1 | Symbols: | Putative lysine decarboxylase family ... 1616 0.0 > AT5G06300.1 | Symbols: | Putative lysine decarboxylase family protein | chr5:1921744-1925370 REVERSE LENGTH=1044 Length=1044 Score = 1616 bits (875), Expect = 0.0 Identities = 963/1004 (96%), Gaps = 12/1004 (1%) Strand=Plus/Plus Query 1 agagagagagagagagagacaaagtaacaaagagaaaagagagagagagatatggaagag 60 |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| Sbjct 45 AGAGAGAGAGAGAGAGAGACAAAGTAACAAAGAG-AAAGAGAGAGA-A-ATATGGAAGAG 101 Query 61 acaaaatcgagaTTCAAGAGGATCTGTGTCTTCTGTGGAAGCAGTTCTGGCAAAAAACCT 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 102 ACAAAATCGAGATTCAAGAGGATCTGTGTCTTCTGTGGAAGCAGTTCCGGCAAAAAACCT 161 Query 121 TCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 TCATACCAAGAAGCTGCCATTCAATTGGGTAACGAGTTGGTGGAGAGAAGGATTGATTTG 221 Query 181 GTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 GTATACGGAGGTGGTAGCGTGGGGCTTATGGGTCTCGTCTCTCAAGCTGTTCATCATGGT 281 Query 241 GGTCGTCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACCGGTGAG 300 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 282 GGTCGCCATGTTCTAGGGGTCATTCCAAAAACCTTGATGCCAAGAGAGATAACTGGTGAG 341 Query 301 ACCATCGGAGAAGTGAAAGCCGTCGCCGATATGCATCAAAGAAAAGCCGAAATGGCTCGT 360 |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 342 ACCATCGGAGAAGTTAAAGCCGTGGCCGATATGCATCAAAGGAAAGCTGAAATGGCTCGC 401 Query 361 CAAGCTGACGCTTTCATTGCCCTTCCTGGTGGGTATGGTACGTTGGAAGAATTGCTGGAA 420 ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 402 CAAGCCGACGCATTCATTGCCCTTCCTGGTGGGTATGGTACGTTAGAAGAATTGCTGGAA 461 Query 421 GTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGAT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 GTCATTACATGGGCTCAACTCGGTATCCACCGTAAGCCGGTGGGTCTTCTTAACGTGGAT 521 Query 481 GGTTACTACAATTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCC 540 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 GGTTACTACAACTCGCTGTTAACGTTTATTGATAAGGCTGTGGACGAAGGATTTATATCC 581 Query 541 CCAATGGCTCGTAGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTC 600 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 CCAATGGCTCGTCGAATCATCGTCTCAGCTCCAAACGCTAAAGAGTTGGTTCGACAACTC 641 Query 601 GAGGAATATGAACCGGAGTTCGATGAGATAACATCGAAATTGGTTTGGGATGAAGTGGAC 660 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 642 GAGGAATATGAACCGGAGTTTGATGAGATAACATCAAAATTGGTTTGGGATGAAGTGGAC 701 Query 661 CGGCTCAGCTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAAGGATATAATATGGGG 720 ||| | || |||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 702 CGGATAAGTTATGTACCGGGTTCGGAGGTAGCTACCGCTACGTAAGGATGTATTATGGGG 761 Query 721 AGTTTATTTTTGGGTAAAAGCAGTGTACAGCGGAA-TTAAAGTTTTTTAACATCAGAAGG 779 ||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct 762 AGTTTATTTTTTGGTAAAAGCAGTGTACAGCGGAAATTAA-GTTGTTTAACATCAGAAGG 820 Query 780 AAAGGTCGGAAAGAAGACGAAAGAAAGTATTGGGGTCGTTTTGATAA-CATTATTTTGTA 838 |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 821 TAAGGGCGGAAAGAAGACAAAAGAAAGTATTGGGGTCGTTTTGATAAACATTATTTTGTA 880 Query 839 GGGGTGGTT-AAATGTGTGAAGTGGATAAACCACGTGGGTAACTGCTAACCGCGTATATA 897 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 881 GGGGTGGTTTAAATGTGTGAAGTGGATAAACCATGTGGGTAACTGCTAACCGCGTATATA 940 Query 898 CCAAACCCCATCA-TCCCCACTTGTCTTTGTACATTTTGGTTTAATGGAAAAAATGAAGG 956 |||||||| |||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 941 CCAAACCCTATCACTCCCCACTTGTCTTTGTACATTTTGGTTTAATGGAAAAAA--A-GG 997 Query 957 ATAGGGCCTATTATCAACAAATGACAAAACGATCCTTTTCTTTT 1000 ||||||| |||| |||| |||||||||||||||||||||||||| Sbjct 998 ATAGGGC-TATTTTCAAGAAATGACAAAACGATCCTTTTCTTTT 1040 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48978293325 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5