BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487501 Length=1149 Score E Sequences producing significant alignments: (Bits) Value AT5G06860.1 | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhib... 1594 0.0 AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhib... 817 0.0 AT5G06865.1 | Symbols: | other RNA | chr5:2132197-2133746 REVE... 728 0.0 > AT5G06860.1 | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhibiting protein 1 | chr5:2132350-2133587 FORWARD LENGTH=1169 Length=1169 Score = 1594 bits (863), Expect = 0.0 Identities = 1042/1128 (92%), Gaps = 13/1128 (1%) Strand=Plus/Plus Query 30 TCTCTTGTTCTTGTTCACATTCCTCACGATCTCTTTGTCTAAAGATCTTTGTAACCAAAA 89 ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 47 TCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAA 106 Query 90 TGACAAAAACACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTGGCTTC 149 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||| Sbjct 107 TGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTC 166 Query 150 GTGGCACCC-CGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCCACCG 208 ||| |||| | | |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 167 ATGGGACCCTC-AAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCG 225 Query 209 TTAACCACCGCGTCACCGCCCTAACTATATTCTCCGGCCAGATCTCTGGTCAGATCCCTC 268 |||||||||| || |||||| |||| |||||||||||||||||||| ||||||||||| Sbjct 226 TTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGG 285 Query 269 CTGAAGTCGGTGACTTGCCGTATCTTGAAACCCTTGTCTTCCGCAAACTCTCTAACCTCA 328 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 286 CTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCA 345 Query 329 CCGGTCA-AATCCAACCCACCATCGCTAAACTCAAGAACCT-C-AAGTACCTCAGGCTCA 385 ||||| | |||||||||||||||||| |||||||||||||| | || | |||||||||| Sbjct 346 CCGGT-ACAATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAA-T-GCTCAGGCTCA 402 Query 386 GTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCGAGT 445 | ||||| |||||||| |||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 403 GCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGT 462 Query 446 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACGTTAC 505 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 463 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTAC 522 Query 506 CTAATATCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGAGTCAT 565 |||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 523 CTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGTTCCATACCAGAGTCAT 582 Query 566 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACACAACCAGCTCTCCGGTC 625 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 583 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACATAACCAGCTCTCCGGTC 642 Query 626 CGATACCCAAATCACTAGGCAACCTCGACTTTAACCGGATCGATTTCTCCCGGAACAAGC 685 | |||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||| Sbjct 643 CAATACCCAAATCATTAGGCAACATCGACTTTAACCGGATCGATTTATCCCGCAACAAGC 702 Query 686 TCGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGGTCCATTGATTTAT 745 || |||||||||||||||||||||||||| |||||||||| || ||||| ||||| |||| Sbjct 703 TCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAACAACCTGGTCTATTGACTTAT 762 Query 746 CAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGGCACTTGGTATC 804 |||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| Sbjct 763 CAAGAAACATGTTCCAG-TTCGATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATC 821 Query 805 TTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGACTGAAACTCCT 864 |||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| ||||| Sbjct 822 TTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGGTGCAGTGGACTGAAGCTCCT 881 Query 865 CTTCAATTCTTCAATGTTAGCTACAATAAATTGTGTGGACATATCCCAACAGGAGGGAAA 924 ||||| |||||||||||||||||||| ||| |||||||||| |||||||| ||||||||| Sbjct 882 CTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGACACATCCCAACTGGAGGGAAA 941 Query 925 CTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTTGTGTGGTGCTCCTCTT 984 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 942 CTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001 Query 985 GAAATTTGCAAGTGAACCAAGCTTGTCTCTAGGATTTCGAAAAAATCTATTTGAGTCAAT 1044 ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||| Sbjct 1002 GAAATTTGCAAGTAAACCAAGCTTATCTCTAGGATTACGAAAAAATATATTTGAGTCAAT 1061 Query 1045 A-TA--GACAAATATGTAATATTATTCGGATTGATTAATAAAACATGAACCAAAACTCGC 1101 | || |||||||||||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 1062 AATATAGACAAATATGTAATGTTATTCGGATTGATTAATAAAACATGAACCAAACCTCTC 1121 Query 1102 CTTTGATGAATTCATAGCACATTTTCAAAGTGTTTGATTTGATGGATT 1149 ||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct 1122 ATTTGATGTATTCATAGCACATTTTCAAAATGTTTTATTTGATGGATT 1169 > AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhibiting protein 2 | chr5:2133918-2135166 FORWARD LENGTH=1166 Length=1166 Score = 817 bits (442), Expect = 0.0 Identities = 816/992 (82%), Gaps = 43/992 (4%) Strand=Plus/Plus Query 32 TCTTGTTCTTGTTCAC-AT--TCCTCACGATC-TCTTT-GTCTAAAGATCTTTGTAACCA 86 ||||| |||||| ||| | ||||||||| | ||||| | |||||||||| ||| | | Sbjct 46 TCTTGCTCTTGTCCACTCTCCTCCTCACGA-CTTCTTTAG-CTAAAGATCTCTGTCA-TA 102 Query 87 AA-ATGACAAAAAC-ACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTG 144 || ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 103 AAGATGAC-AAAACTACCCTCCTCAAGATCAAGAAATCCCTAAACAACCCTTACCACCTC 161 Query 145 GCTTCGTGGCACCCCGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCC 204 || || ||| | ||| | |||||||||||||| |||||||||||||||||||||||||| Sbjct 162 GCCTCATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCT 221 Query 205 ACCGTTAACCACCGCGTCACCGCCCTAA-CTATATTCTCCGGCCAGATCTCTGGTCAGAT 263 || || |||||||| ||||| |||||| | ||| |||| ||||||| |||||||| Sbjct 222 ACTGTCAACCACCGTGTCACTTCCCTAATC-ATACAAGACGGCGAGATCTCCGGTCAGAT 280 Query 264 CCCTCCTGAAGTCGGTGACTTGCCGTATCTTGAAA-CCCTTGTCTTCCGCAAACTCTCTA 322 ||| ||||||||||||||||| ||||||||| | | ||||| |||||||||||||| ||| Sbjct 281 CCCCCCTGAAGTCGGTGACTTACCGTATCTT-ACATCCCTTATCTTCCGCAAACTCACTA 339 Query 323 ACCTCACCGGTCAAATCCAACCCACCATCGCTAAACTCAAGAACCTCAAGTACCTCAGGC 382 ||||||| ||||| ||||||||||| ||||| || ||||||||||||| | ||||| | Sbjct 340 ACCTCACTGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGAC 399 Query 383 TCAGTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCG 442 | || ||||| ||||| || ||||| ||||||| ||||| || |||||||||||||| | Sbjct 400 TAAGCTGGACCAATCTCACCGGTCCGGTTCCTGAGTTTCTGAGTCAGCTCAAGAATCTTG 459 Query 443 AGTTC-TTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACG 501 ||| | || || |||||||||||||| ||||||||||||||||| ||||| |||||| | Sbjct 460 AGTACATT-GACCTTTCCTTCAATGACCTCTCTGGTTCCATACCTAGTTCCCTCTCTTCA 518 Query 502 TTACCTAATA-TCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGA 560 |||| ||| | || | ||||||||||| |||||||| ||||||||| | |||||||| Sbjct 519 TTACGTAA-ACTCGAGTATCTTGAACTTAGTAGGAACAAGCTTACAGGTCCGATACCAGA 577 Query 561 GTCATTTGGGTCGTTTCCAGGAACAG-TCCCT-GACCTTCGCCTATCACACAACCAGCTC 618 |||||||||| ||||| |||||| || ||||| | | || ||||||||||||||||||| Sbjct 578 GTCATTTGGGACGTTTTCAGGAA-AGGTCCCTAGTCTTTT-CCTATCACACAACCAGCTC 635 Query 619 TCCGGTCCGATACCCAAA-TCACTAGGCAA-CCTCGACTTTAACCGGATCGATTTCTCCC 676 || ||| | ||||| ||| ||||||||||| || ||||||| |||| |||||||| || | Sbjct 636 TCTGGTACTATACC-AAAGTCACTAGGCAATCC-CGACTTTTACCGCATCGATTTATCTC 693 Query 677 GGAACAAGCT-CGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGG-TC 734 |||||||||| | |||| |||||||| || |||||||| || || ||||| |||||| || Sbjct 694 GGAACAAGCTTC-AAGGCGATGCTTCAATCTTGTTTGGAGCTAAAAAAACAACATGGATC 752 Query 735 CATTGATTTATCAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGG 793 ||||| ||||||||||||||||| || |||||| |||| |||||| || || ||||| Sbjct 753 G-TTGATATATCAAGAAACATGTTCCAG-TTCGATCTCTCCAAGGTTAAGCTCGCTAAGA 810 Query 794 CACTTGGTATCTTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGA 853 ||||| || ||||||| | || |||||||| |||||||||| ||| |||| | |||||| Sbjct 811 CACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAGTATTCCGGCTGAGTGGA 870 Query 854 -CTGAAA-CTCCTCTTCAATT-CTTCAATGTTAGCTACAATAAATTGTGTGGACATATCC 910 | ||| || | |||| || || ||||||||||| || | | ||||||||| |||| Sbjct 871 GC--AAAGCTTATTTTCAGTTACTG-AATGTTAGCTATAACAGACTGTGTGGACGCATCC 927 Query 911 C-AACAGGAGGGAA-ACTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTT 968 | || ||||| | | | |||| | ||||||||||||||||| |||||| ||||||||||| Sbjct 928 CCAA-AGGAGAGTATA-TTCAAAGATTTGATTCTTATTCCTTTTTCCACAACAAGTGTTT 985 Query 969 GTGTGGTGCTCCTCTTGAAATTTGCAAGTGAA 1000 |||||||| |||||| | ||||||||||| Sbjct 986 ATGTGGTGCACCTCTTCCTAGTTGCAAGTGAA 1017 > AT5G06865.1 | Symbols: | other RNA | chr5:2132197-2133746 REVERSE LENGTH=1402 Length=1402 Score = 728 bits (394), Expect = 0.0 Identities = 482/524 (92%), Gaps = 8/524 (2%) Strand=Plus/Minus Query 30 TCTCTTGTTCTTGTTCACATTCCTCACGATCTCTTTGTCTAAAGATCTTTGTAACCAAAA 89 ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 1203 TCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAA 1144 Query 90 TGACAAAAACACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTGGCTTC 149 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||| Sbjct 1143 TGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTC 1084 Query 150 GTGGCACCC-CGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCCACCG 208 ||| |||| | | |||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1083 ATGGGACCCTC-AAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCG 1025 Query 209 TTAACCACCGCGTCACCGCCCTAACTATATTCTCCGGCCAGATCTCTGGTCAGATCCCTC 268 |||||||||| || |||||| |||| |||||||||||||||||||| ||||||||||| Sbjct 1024 TTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGG 965 Query 269 CTGAAGTCGGTGACTTGCCGTATCTTGAAACCCTTGTCTTCCGCAAACTCTCTAACCTCA 328 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 964 CTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCA 905 Query 329 CCGGTCA-AATCCAACCCACCATCGCTAAACTCAAGAACCT-C-AAGTACCTCAGGCTCA 385 ||||| | |||||||||||||||||| |||||||||||||| | || | |||||||||| Sbjct 904 CCGGT-ACAATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAA-T-GCTCAGGCTCA 848 Query 386 GTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCGAGT 445 | ||||| |||||||| |||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 847 GCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGT 788 Query 446 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACGTTAC 505 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 787 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTAC 728 Query 506 CTAATATCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGT 549 |||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 727 CTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGT 684 Score = 689 bits (373), Expect = 0.0 Identities = 438/470 (93%), Gaps = 2/470 (0%) Strand=Plus/Minus Query 546 AGGTTCAATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATC 605 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 AGGTTCCATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATC 559 Query 606 ACACAACCAGCTCTCCGGTCCGATACCCAAATCACTAGGCAACCTCGACTTTAACCGGAT 665 ||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| Sbjct 558 ACATAACCAGCTCTCCGGTCCAATACCCAAATCATTAGGCAACATCGACTTTAACCGGAT 499 Query 666 CGATTTCTCCCGGAACAAGCTCGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAAC 725 |||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 498 CGATTTATCCCGCAACAAGCTCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAAC 439 Query 726 GACATGGTCCATTGATTTATCAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGA 784 || ||||| ||||| |||||||||||||||||| || |||||||||||||||||||| | Sbjct 438 AACCTGGTCTATTGACTTATCAAGAAACATGTTCCAG-TTCGATATCTCAAAGGTTGATA 380 Query 785 TCCCTAAGGCACTTGGTATCTTGGACTTAAACCACAATGGGATCACAGGGAATATACCGG 844 ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 379 TCCCTAAAACACTTGGTATCTTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGG 320 Query 845 TTCAGTGGACTGAAACTCCTCTTCAATTCTTCAATGTTAGCTACAATAAATTGTGTGGAC 904 | |||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||| Sbjct 319 TGCAGTGGACTGAAGCTCCTCTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGAC 260 Query 905 ATATCCCAACAGGAGGGAAACTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGT 964 | |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 259 ACATCCCAACTGGAGGGAAACTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGT 200 Query 965 GTTTGTGTGGTGCTCCTCTTGAAATTTGCAAGTGAACCAAGCTTGTCTCT 1014 ||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 199 GTTTGTGTGGTGCTCCTCTTGAAATTTGCAAGTAAACCAAGCTTATCTCT 150 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56375212035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5